Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120149.Seq
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0155 - 1362710-1363267                                           32   0.33 
01_01_0156 - 1364856-1365401                                           29   2.4  
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     28   5.4  
01_06_1642 + 38857326-38857581,38858577-38858818,38859001-388600...    28   5.4  
11_01_0164 - 1342790-1342870,1343031-1343117,1343201-1343319,134...    27   9.5  
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235...    27   9.5  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    27   9.5  
02_05_0409 - 28723534-28724646                                         27   9.5  
02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270     27   9.5  

>01_01_0155 - 1362710-1363267
          Length = 185

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
 Frame = -3

Query: 488 PNPFCKPRRG--------CSARTPSICICTRNIEFCLRAC 393
           P PFC PR          CS   P IC C   +E C  AC
Sbjct: 108 PGPFCTPRPWGDCCDMDICSRSLPPICRCADEVESCAAAC 147


>01_01_0156 - 1364856-1365401
          Length = 181

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
 Frame = -3

Query: 488 PNPFCKPR--------RGCSARTPSICICTRNIEFCLRAC 393
           P PFC PR          C+   P IC C   ++ C  AC
Sbjct: 108 PGPFCTPRPWGDCCTNTTCTRSIPPICRCNDKVKKCAAAC 147


>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 339 HITIRRRHPTWTRSCVSRASPQT 407
           +I  RRRH T+T SC  R SP +
Sbjct: 21  YIPPRRRHGTFTSSCAFRLSPSS 43


>01_06_1642 +
           38857326-38857581,38858577-38858818,38859001-38860004,
           38860170-38860587,38860673-38860789
          Length = 678

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 365 DVDEIMCQSCKPANKIQCFECKCRYLASSLSTLDEACKMGWDIFLRPMLACLSC 526
           ++D+ + Q     NK Q  +    +   S STL E+ K   D+FL+  LA   C
Sbjct: 202 ELDQSLSQWDTDFNKAQVTKVAFGHFPMSFSTLTESGKSIKDVFLKHSLAAYLC 255


>11_01_0164 -
           1342790-1342870,1343031-1343117,1343201-1343319,
           1343405-1343641,1343984-1344044,1344360-1344752,
           1345866-1346165
          Length = 425

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
 Frame = +1

Query: 322 YAILANILQSD-AGTRRGRDHVSVVQARKQNSMFRVQMQ---ILGVLAEHPRRGLQNGLG 489
           ++IL N +Q   +G   G    SVV      S + + +    ILG +     +G+   +G
Sbjct: 318 FSILLNSVQPVLSGVAIGSGWQSVVAYVNVTSYYFIGIPLGAILGYVLGFQAKGIW--IG 375

Query: 490 HFFKTHVGMPLMLYVLLRTDYKNESDVINETI 585
               T V   ++L++ LRTD+K + ++  E +
Sbjct: 376 MLLGTLVQTLVLLFITLRTDWKKQVEITRERL 407


>08_02_0499 -
           17820615-17822516,17823224-17823373,17823491-17823568,
           17823948-17824061,17824145-17824297,17826928-17827071,
           17827162-17827516,17828574-17828741,17829522-17829751,
           17829916-17830049,17830686-17830749
          Length = 1163

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 287 EFIKQVP---QFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKI 412
           E IKQ P     +  MQ++ T+  PT  P +D ++  +  P + I
Sbjct: 468 EGIKQAPCKALIKGFMQFMSTHGGPTEIPILDSVISNAVVPGSDI 512


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 55  ASKTCVLKRNCYEMKSIRCVFYFQNISTKA*SWTVKVLLF 174
           A K+  +   C E+ +  C+  F  + +KA SW V+ LL+
Sbjct: 27  AIKSSEVALKCSELDTTNCLGPFLTLGSKAGSWCVRHLLW 66


>02_05_0409 - 28723534-28724646
          Length = 370

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 376 LVHVGCRRRIVICLQVLHNGPKLGHLFDELVAQK 275
           LV  G R  +V+ +     GPKLGH+F+ LV+ K
Sbjct: 240 LVAAGDRLLLVLFMM----GPKLGHMFETLVSVK 269


>02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270
          Length = 248

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 503 PMLACLSCCTCCFGP 547
           PML   SCC CCFGP
Sbjct: 211 PMLPPSSCC-CCFGP 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,397,105
Number of Sequences: 37544
Number of extensions: 379210
Number of successful extensions: 1107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)