Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120149.Seq
(640 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28) 29 4.2
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89) 28 5.6
SB_21258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_16965| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_51557| Best HMM Match : Collagen (HMM E-Value=0.56) 27 9.7
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27) 27 9.7
SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18) 27 9.7
SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08) 27 9.7
SB_24499| Best HMM Match : Fibrinogen_C (HMM E-Value=0.00053) 27 9.7
SB_15242| Best HMM Match : E2F_TDP (HMM E-Value=6e-14) 27 9.7
SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092) 27 9.7
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 258 KTFFRYFCATSSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTKFNVSSANAD 437
K + Y CAT+ + K P GP KHI +R P + A T S A++D
Sbjct: 4800 KCYDDYLCATTHT-KLPGFGPQVIRIKHIVRPKRPPKPQIDTIFNAIEPTGPTKSCAHSD 4858
Query: 438 TWR 446
++
Sbjct: 4859 IFK 4861
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 29.1 bits (62), Expect = 3.2
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +1
Query: 208 KVVLRIKPTTQTTYTIKKHFFDIFARRVHQTSAPI*DHYAILANILQSDAGTRRGRDHVS 387
K+++R + YT K F R HQ + Y + I +SD G RGR VS
Sbjct: 106 KLIIRKASSVIERYTCIK-----FEERKHQRDYV--EFYMDKSGICESDIGRIRGRQTVS 158
Query: 388 VVQ-ARKQNSMFRVQMQILGVLAEHPR 465
+ Q R + M LG EH R
Sbjct: 159 LGQGCRNPGHVTHELMHTLGFYHEHTR 185
>SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)
Length = 647
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 297 NKCPNLGPLCNTCKHITIRR 356
NK PNLG LC TC+ +R
Sbjct: 470 NKAPNLGGLCRTCEIFGAKR 489
>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
Length = 1354
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +2
Query: 260 NIFSIFLRDEFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRY 439
+IFS +EF++ P R + L + P D+D + S + + +CK +
Sbjct: 746 HIFSPSASEEFVRAQPNNREPLLGLGSIQLTVPEADLDSLYSWSLEHGMEFSASKCKVVH 805
Query: 440 LASSLST 460
++ ST
Sbjct: 806 MSKKRST 812
>SB_21258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 148 IKLWLKYFENKKHNESISSRNNCASKHTFSKRSYVLNLKLYCNL 17
IKLWLK N +NE +S + + A + +K + +K +L
Sbjct: 361 IKLWLKLSNNNGNNEKLSRKASAAISNYENKNFWHRKIKQILHL 404
>SB_16965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 264 FFRYFCATSSSNKCP 308
FFRY+C+ S S CP
Sbjct: 36 FFRYYCSISQSEHCP 50
>SB_51557| Best HMM Match : Collagen (HMM E-Value=0.56)
Length = 697
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = -1
Query: 334 QVLHNGPKLGHLF--DELVAQKYRKN 263
++LHN PKLGHL +E ++ RKN
Sbjct: 214 KLLHNNPKLGHLLIVNEGSGEEERKN 239
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +2
Query: 341 YYNPTPAP-DVDEIMCQSCKPANKIQ-CFECKCRYLASSLSTLDEACKMGW--DIFLRPM 508
++NP + + C +C+ N ++ C C ++ + E + G + LR
Sbjct: 807 FFNPRDMQCEPCDYYCSTCEGGNGLRNCSACVAPFILLDSYCVRECPQKGHFLNAKLRQC 866
Query: 509 LACLSCCTCCFGPITKTKVT 568
C S C+ C GP +T
Sbjct: 867 KKCHSSCSSCIGPSANDCIT 886
>SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)
Length = 611
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = -1
Query: 148 IKLWLKYFENKKHNESISSR-----NNCASKHTFSKR 53
IKLWLK N +NE +S + +NC +K+ + ++
Sbjct: 189 IKLWLKLSNNNGNNEKLSRKAFATISNCENKNFWHRK 225
>SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18)
Length = 802
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 294 SNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTKFNVSSANADTWRP 449
S KCP L +CN C+ ++ H + + C +A P K VS+A TW P
Sbjct: 115 STKCPALEAICNKCQ----KKGH--FAKVCKGKAVP--KERVSAA---TWSP 155
>SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)
Length = 690
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 347 NPTPAPDVDEIMCQSCKPANKIQCFECKCRY 439
NP P +++C+ C+ +QC +C+ Y
Sbjct: 5 NPLANPKGVKLVCELCQKPAFVQCTDCRVTY 35
>SB_24499| Best HMM Match : Fibrinogen_C (HMM E-Value=0.00053)
Length = 274
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 326 QYLQTYYNPTPAPDVDEIMCQS-CKPANKIQCFECKCR 436
+Y+Q NP D D M +S C P + ++C CR
Sbjct: 8 EYIQWLKNPC---DPDHCMYESQCNPVSNADIYQCNCR 42
>SB_15242| Best HMM Match : E2F_TDP (HMM E-Value=6e-14)
Length = 273
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = +3
Query: 282 ATSSSNKCPNL---GPLCNTCKHITIRRRHPT----WTRSCVSRASPQTKFNVSSANADT 440
+T SN L G C+T + R+ HP +TRSC S + ++S+
Sbjct: 162 STQPSNSLAKLFEQGMGCSTVRTYAGRQAHPNEIEEFTRSCASGLVTTEREGLNSSLRHA 221
Query: 441 WRPR*AP 461
WR R +P
Sbjct: 222 WRMRTSP 228
>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
Length = 1146
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +2
Query: 188 QMYCFHKK*F*ESSQQHRQHTQLKNIFSIFLRDEFIKQVPQFRTIMQYLQTYYNPTPAP 364
Q H++ + QQ QLK L E +KQ Q R + Q+LQ P P P
Sbjct: 735 QQQQLHREQLKQKQQQQLHQEQLKQQQQQQLHREQLKQQQQQR-LQQHLQQQQQPPPPP 792
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,291,391
Number of Sequences: 59808
Number of extensions: 488596
Number of successful extensions: 1423
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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