Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120149.Seq
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    31   0.92 
U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z75549-5|CAA99918.1|  364|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   4.9  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 543 PKQHVQHERHANMGLKKMSQPILQA 469
           P Q VQH +H N  L  + QP+LQ+
Sbjct: 900 PPQQVQHNQHQNQMLNPIRQPLLQS 924


>U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical
           protein C03G6.5 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 196 IHLLNSVKKVRPLPSTIKLWLKYFENKKHN-ESISSRNNCASKHTFSKRSYVLNLKLYCN 20
           + L +  +KV  L    K  LK F+    +  S  S  NC +K    K  YV ++K YC+
Sbjct: 75  VRLSDFAEKVDNLDMNDKTKLKEFKRSCDSLHSCYSNLNCTTKSDDEKDKYVESIKQYCD 134


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 469 LVEGAQRGRQVSAFALETLNFVCGLARLTHD 377
           +  G Q G+  SA   ET++FVC L    +D
Sbjct: 157 MTNGTQAGKWASASCTETMSFVCELPATIYD 187


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 476 CKPRRGCSARTPSICICTRNIEFCLRACT 390
           C+PR  C  R    C C R    C R CT
Sbjct: 69  CRPRCCCCCRPKCCCTCCRTC-CCTRCCT 96


>Z75549-5|CAA99918.1|  364|Caenorhabditis elegans Hypothetical
           protein T19C4.5 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 225 QANNTDNIHN*KTFFRYFCATSSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQ 404
           Q   +D++   KT  R   A + S+   N   +CN+C  ++  +R+P    +  S    Q
Sbjct: 193 QLQESDHLDVEKTQSRMEDAVTDSSSTDNTSNMCNSCTSLSSGQRYPKPLTTRNSETQMQ 252

Query: 405 TKFNVSS 425
           T    SS
Sbjct: 253 TLKEESS 259


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 476 CKPRRGCSARTPSICICTRNIEFCLRACT 390
           C+PR  C  R    C C R    C R CT
Sbjct: 71  CRPRCCCCCRPKCCCTCCRTC-CCTRCCT 98


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 476 CKPRRGCSARTPSICICTRNIEFCLRACT 390
           C+PR  C  R    C C R    C R CT
Sbjct: 74  CRPRCCCCCRPKCCCTCCRTC-CCTRCCT 101


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 491 CPNPFCKPRRGCSARTP 441
           CP P C+PR  C+A  P
Sbjct: 30  CPTPMCQPRMPCAAPMP 46


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +3

Query: 12  AYRLQYSLRFNTYDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNK 191
           AY+ + S+    +D FEN+ +      D++ S+   + K  +   +++    T   E   
Sbjct: 161 AYKRKKSVITEVFDEFENILWSVCSFSDKLTSIS-CYKKEMDPDCLIENVN-TLSNELEN 218

Query: 192 CIVSIKSSFENQANNTDNIH 251
               + + F     NTD IH
Sbjct: 219 -FEKVTAEFTKYLVNTDGIH 237


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +1

Query: 40  LTRTTASKTCVLKRNCYEMKSI--RCVF 117
           +TRTT  K C L  NC+    I  +CVF
Sbjct: 36  ITRTTPVKKCYLGENCFTKTPITQKCVF 63


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
            C38D4.3 protein.
          Length = 1784

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +3

Query: 57   FENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANN 236
            FEN  FEA  +  E  S   L S +    +  DG+G     +  +  +S+K  FE +  N
Sbjct: 891  FENEKFEA--MSSEAISSNKLLSAFLPGMIKKDGRGRQKTAKEQEIEISVKKMFERKVQN 948

Query: 237  TD 242
             D
Sbjct: 949  DD 950


>AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical
           protein W09B6.1b protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 285 TSSSNKCPNLGPLCNTCKHITIRRRHPT 368
           T  +++   +  +C+T KH+TIR   PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 285 TSSSNKCPNLGPLCNTCKHITIRRRHPT 368
           T  +++   +  +C+T KH+TIR   PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,970,423
Number of Sequences: 27780
Number of extensions: 375133
Number of successful extensions: 1343
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)