Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120148.Seq
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    30   1.8  
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237...    29   2.4  
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919...    28   5.5  

>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
            26699321-26699416
          Length = 1515

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/55 (23%), Positives = 34/55 (61%)
 Frame = -2

Query: 520  KDVVETIVMSHSDILNLKELRNKLMSNKSIDTVGLQCLKVKCFKLGKTDLKLFNI 356
            K++ +T V SH++IL L+E +NK +S+     + ++  +++  + G+  + + ++
Sbjct: 947  KELEDTKVSSHAEILALQEQKNKALSDLQQSEISIENFRME-LEQGREKISILDL 1000


>03_05_0440 +
           24322332-24322388,24323478-24323615,24323654-24323736,
           24325038-24325128,24326091-24326189,24326356-24326418,
           24327182-24327259,24329354-24329543,24329812-24330065,
           24330159-24330531,24331193-24331276,24332085-24332371,
           24332495-24332542,24333194-24333220,24333951-24333987,
           24334063-24334250,24334343-24334521,24334595-24334877,
           24335481-24335717,24335798-24335988,24336552-24336561,
           24336844-24336984,24337073-24337288,24338437-24338727,
           24338852-24339025
          Length = 1272

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 520 KDVVETIVMSHSDILNLKELRNKLMSNKSIDTV 422
           KDV +T  M  SD+ N+     K+ SNK++DTV
Sbjct: 609 KDVEKTEWMEISDLDNVSAEEGKVSSNKAMDTV 641


>09_04_0588 -
           18789971-18790000,18790334-18790507,18791470-18791954,
           18792912-18793266
          Length = 347

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 102 YYLSHRCLKDKISGAFVSSDAP 37
           YYL  RC KD ++G +V   AP
Sbjct: 222 YYLHARCAKDVVNGLYVHGVAP 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,120,041
Number of Sequences: 37544
Number of extensions: 199419
Number of successful extensions: 449
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)