Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120148.Seq
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29959| Best HMM Match : GoLoco (HMM E-Value=5.4e-17)                28   7.5  
SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.5  
SB_23022| Best HMM Match : CUB (HMM E-Value=0)                         27   9.9  

>SB_29959| Best HMM Match : GoLoco (HMM E-Value=5.4e-17)
          Length = 774

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 573 ITKVYHRQNWHKTPLVQIEP 632
           I  V  R  WHKTPLV ++P
Sbjct: 594 INDVIPRGKWHKTPLVLLKP 613


>SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 454 KLMSNKSIDTVGLQCLKVKCFKLGKTDLKLFNIGMTTFPI 335
           K + NKS+   GL  L ++C+KL K   K  N  +  F I
Sbjct: 78  KTLLNKSVHVKGLAQLPLQCYKLHKVKAKPQNNLLDDFTI 117


>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
          Length = 1307

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 105  VYYLSHRCLKDKISGAFVSSDAPVFESRR 19
            V  L HRC KDK SG F        E +R
Sbjct: 1155 VIVLCHRCRKDKTSGRFTMGQDSEVELKR 1183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,815,286
Number of Sequences: 59808
Number of extensions: 245298
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)