Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120148.Seq
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical
           protein F59D12.3 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
 Frame = +3

Query: 147 IHSTMYFLMKIRD*A*TPYKNIKQKKQKSRLEKSVSRFLLQEDNSLSGILL--YQWCSS- 317
           ++ T   L K++     P+KN K +K+ +   K  SRF  Q  N    +L   Y +  S 
Sbjct: 30  MNGTKINLGKVKTTVEAPFKNKKNRKKSAFPNKQRSRF-FQTFNRFEKLLRGNYNYLRSI 88

Query: 318 AG*VFNIGNVVIPILNNFKSVFPSLKHLTFKHC--SPTVSIDLLDINLFLNSFR 473
           +       + +IP    F+S F +    +   C     +S  LL++  FLN+ R
Sbjct: 89  SNWTHTSSSPLIPPYVPFRSTFVTSPKYSLAACRIQKNLSTILLNLFCFLNTPR 142


>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
           protein F56D5.9 protein.
          Length = 1132

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = -2

Query: 526 DSKDVVETIVMSHS-DILNLKELRNKLMSNKSIDTVGLQCLKVKCFKLGKTDLKLFNI 356
           D  + V++I+ + S D LN  ++  ++   K+  T+G +CL+   FKLGK +  LFN+
Sbjct: 451 DGSEFVKSIINAPSLDYLN--DVLLEVNVTKAF-TIG-KCLRTGNFKLGKINNNLFNL 504


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,217,345
Number of Sequences: 27780
Number of extensions: 205069
Number of successful extensions: 553
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)