Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120148.Seq
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03200.1 68415.m00273 aspartyl protease family protein contai...    29   2.6  
At5g22680.1 68418.m02650 hypothetical protein                          29   3.5  
At1g06950.1 68414.m00738 chloroplast inner envelope protein-rela...    28   6.1  

>At2g03200.1 68415.m00273 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 461

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 258 FLLQEDNSLSGILLYQWCSSAG*VFNIGNVVIPILNNFKSVFPSLKHLTFKHCSPTVSID 437
           F  +++NS+SGI       + G  F+ G+ ++ +     S+   LK   F +C  ++   
Sbjct: 203 FTFEDENSISGIGFGCGVENEGDGFSQGSGLVGLGRGPLSLISQLKETKFSYCLTSIEDS 262

Query: 438 LLDINLFLNS 467
               +LF+ S
Sbjct: 263 EASSSLFIGS 272


>At5g22680.1 68418.m02650 hypothetical protein 
          Length = 235

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 265 RRNLDTDFSNLDFCFFCFMFL 203
           + +LD DF  ++ C+ CF FL
Sbjct: 17  KNSLDLDFDFVEICYLCFFFL 37


>At1g06950.1 68414.m00738 chloroplast inner envelope protein-related
            similar to chloroplast inner envelope protein GI:1495767
            from [Pisum sativum]
          Length = 1016

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = -2

Query: 517  DVVETIVMSHSDILNLKELRNKLMSNKSIDTVGLQCLKVKCFKLGKTDLKLFNIGMTTF- 341
            + +ET V  +   LN+K++R    +N S+D++    L+ K FK  KT   +F+ G   F 
Sbjct: 829  NAIETAV--NQGRLNIKQIRELKEANVSLDSMIAVSLREKLFK--KTVSDIFSSGTGEFD 884

Query: 340  --PILKT*PAEL 311
               + +T P++L
Sbjct: 885  ETEVYQTIPSDL 896


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,295,150
Number of Sequences: 28952
Number of extensions: 184226
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)