Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120147.Seq
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    29   0.53 
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   3.7  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   6.5  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   6.5  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.6  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   8.6  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   8.6  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   8.6  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   8.6  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +1

Query: 160 DMLQTINTTASQTA-ASLLIND---ITPNKTESLKICLLNLSE 276
           D +Q +NTT+S +A AS  I       PN+ E LK+C L+L++
Sbjct: 666 DWVQPVNTTSSVSAFASPRIKPKLLFQPNQDEKLKLCKLDLAK 708


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +3

Query: 456 KQIAVKNRRAYAIGDMAPIFPLLCDEHQNVQLNTDVLINFIMHVARKSQNTILNNNAAIA 635
           K + V + R Y+I D   +   + +   N+QL  D     ++ V+++   T LNN   I 
Sbjct: 251 KDVRVFDWRPYSIADRNAVLSRMSNAFDNMQLPPDAPERSLL-VSKQKNITKLNNEKRIP 309

Query: 636 SQ 641
            Q
Sbjct: 310 PQ 311


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 148 MAAVDMLQTINTTASQTAASLLINDITPNKTESLKI 255
           +AA      +  +  Q  A  LIND+ PNK   L I
Sbjct: 447 LAAYSKEAQLPGSIKQNIAQYLINDVVPNKDGDLSI 482


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 488 CNWRYGPDISFALRRTSKRAVEHRRVDKFYN 580
           CNW+Y PD+ +     S    E+  V    N
Sbjct: 114 CNWKYNPDLDYCYLDNSTSPDEYVYVSLVQN 144


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 613 KIVFCDLRATCIIKFINTSVFNCTF*CSSQSKGNIGAISPI 491
           +IVF DL    I+KF +T+V   +      +KGN+ AI  I
Sbjct: 234 QIVFEDLSGKKIMKFEDTAVSTASNHSKQFTKGNLLAIKYI 274


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 522 LCDEHQNVQLNTDVLINFI 578
           +CD H+N   N D+L  F+
Sbjct: 387 ICDLHENTSFNIDILPGFL 405


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 166 LQTINTTASQTAASLLINDITPNKTESLKICLLNLSERA 282
           L +I+T +S   AS + + +TP K   + IC ++   R+
Sbjct: 8   LTSIDTESSTRTASPVSSIVTPTKRNVVGICAMDAKARS 46


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 274 ERAICWNRCKPTRPKLS*IESKRSTC*TFWGAFTTTRSK 390
           E   C N   P  P+++ +  + S     +G+ +TTRSK
Sbjct: 172 ENESCLNNAAPGSPEVAVLSFRHSFHGRLFGSLSTTRSK 210


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 67  YHRYHLLKQSWLSSISRDISLS 2
           Y++  L K+SW  S+S +ISLS
Sbjct: 107 YYQEALRKKSWSRSLSNNISLS 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,998
Number of Sequences: 5004
Number of extensions: 51693
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)