Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120143.Seq
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.9  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   5.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.2  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   6.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.1  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 443 SYIEINLFIRLSRSKTK 393
           S+ EIN F  +S SKTK
Sbjct: 60  SWTEINAFANVSPSKTK 76


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 494  FIRVQFYDYTSQWLSVSSYI 435
            +I V  YDY  QW  ++ ++
Sbjct: 2009 WIAVMCYDYHGQWDKITGHV 2028


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 144 KILTRWDETGGYKP 185
           KIL R+ ETG  +P
Sbjct: 89  KILNRYQETGSIRP 102


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = +2

Query: 110 ILSYQVIKSL*KNINTLGRDGRL 178
           +++Y + KS+ + ++ +GR GR+
Sbjct: 481 VINYDLPKSIDEYVHRIGRTGRV 503


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 458 IGTYSHKIEHG*STENCENFRALCTGEKRFGYKGSSFHRIIPDFMC 595
           IG+YS K   G   +NCE     C  +      G + H ++  F C
Sbjct: 203 IGSYSCKCPKGFQGQNCELNVDDC--KPNPCQNGGTCHDLVNSFSC 246


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 509 ENFRALCTGEK 541
           ++FR LCTG K
Sbjct: 410 DDFRGLCTGNK 420


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 494 FIRVQFYDYTSQW 456
           FI V  YD+  QW
Sbjct: 702 FINVMTYDFHGQW 714


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,138
Number of Sequences: 336
Number of extensions: 3775
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)