Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120143.Seq
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 88 9e-19
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 84 2e-17
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 68 1e-12
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 60 2e-10
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 50 4e-07
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 46 4e-06
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 38 0.001
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 37 0.003
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 33 0.049
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 29 0.80
SPBC83.06c |||mitochondrial ribosomal protein subunit L36|Schizo... 28 1.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 1.8
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 27 1.8
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 27 2.4
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 7.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.4
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.8
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 88.2 bits (209), Expect = 9e-19
Identities = 37/46 (80%), Positives = 40/46 (86%)
Frame = +2
Query: 512 NFRALCTGEKRFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG 649
NFRALCTGEK +GY GS+FHR+IP FM QGGDFT NGTGGKSIYG
Sbjct: 33 NFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDFTRGNGTGGKSIYG 78
Score = 46.0 bits (104), Expect = 5e-06
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = +3
Query: 429 YFDVTADGEPLGRIVIKLNTDEVPKTARTLELCVLVKKGLG 551
+FDV A+G+PLGRIV KL D VPKTA +KG G
Sbjct: 5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYG 45
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 83.8 bits (198), Expect = 2e-17
Identities = 36/50 (72%), Positives = 41/50 (82%)
Frame = +2
Query: 500 ENCENFRALCTGEKRFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG 649
+ ENFRAL TGEK FGY+GS FHR+IP+FM QGGD T +GTGGKSIYG
Sbjct: 54 KTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYG 103
Score = 34.3 bits (75), Expect = 0.016
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +3
Query: 426 VYFDVTADGEPLGRIVIKLNTDEVPKTARTLELCVLVKKGLG 551
VYFD+ E LGR+ I L VPKTA +KG G
Sbjct: 29 VYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFG 70
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 67.7 bits (158), Expect = 1e-12
Identities = 31/51 (60%), Positives = 38/51 (74%), Gaps = 4/51 (7%)
Frame = +2
Query: 509 ENFRALCTGEKRFG----YKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG 649
+NF +LC G ++ G YKGS FHR+I +FM QGGDFT NGTGG+SIYG
Sbjct: 33 KNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYG 83
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 60.5 bits (140), Expect = 2e-10
Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Frame = +2
Query: 500 ENCENFRALCTGE------KRFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIY 646
+ ENFR CTGE K GYK S+FHRII FM QGGDF + +GTG +I+
Sbjct: 32 KTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDGTGSATIF 86
Score = 33.9 bits (74), Expect = 0.021
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +3
Query: 405 STQPDKQVYFDVTADGEPLGRIVIKLNTDEVPKTA 509
ST+P V+ D+ DG LGRI I+L + VPKTA
Sbjct: 2 STEP--VVFMDIAIDGRLLGRIKIRLFSSIVPKTA 34
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 49.6 bits (113), Expect = 4e-07
Identities = 26/50 (52%), Positives = 30/50 (60%)
Frame = +2
Query: 500 ENCENFRALCTGEKRFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG 649
+ C+NF L K Y G FHR+IPDF+ QGGD T G GG SIYG
Sbjct: 24 KTCQNFYTLA---KEGYYDGVIFHRVIPDFVIQGGDPTG-TGRGGTSIYG 69
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 46.4 bits (105), Expect = 4e-06
Identities = 23/48 (47%), Positives = 29/48 (60%)
Frame = +2
Query: 506 CENFRALCTGEKRFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG 649
C NF LC Y G+ HR++P+F+ QGGD T G GG+SIYG
Sbjct: 37 CRNFIQLCLEGY---YDGTIVHRVVPEFLIQGGDPTG-TGMGGESIYG 80
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +2
Query: 551 YKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIY 646
Y + FHRII +FM QGGD +GTGG+SI+
Sbjct: 491 YDNTIFHRIIKNFMIQGGDPLG-DGTGGESIW 521
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 551 YKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGR 652
Y+ + FHR I FM QGGD + G GG+SI+G+
Sbjct: 312 YRNTIFHRNIARFMIQGGD-PSGTGRGGQSIWGK 344
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.7 bits (71), Expect = 0.049
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 500 ENCENFRALCTGEKRFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIY 646
+ CENF LC K Y F+ I ++ CQ GD G GG+ ++
Sbjct: 23 KTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTGDPLGPTGDGGRCVW 68
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 28.7 bits (61), Expect = 0.80
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 175 PPVSSQRVNIFSKGFYDLVTKNFMSSL 95
PPVSSQ FS+G ++L N SL
Sbjct: 101 PPVSSQHRRFFSEGSFNLPNSNMSHSL 127
>SPBC83.06c |||mitochondrial ribosomal protein subunit
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 59
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 266 SKVHIVKYTGRIYLVCDENPNHDT 337
S + V+ GR+Y++C ++P H T
Sbjct: 33 SSCYFVRRKGRLYVLCKKHPRHKT 56
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -1
Query: 471 LYVPMALRQQLHRNKLVYQVESKQNEVLQQSI 376
LYV +A R+++ R++L Q++++ LQQ +
Sbjct: 434 LYVALAQRKEVRRSQLEAQIQARNQFRLQQQV 465
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = -1
Query: 564 DEPLYPNLFSPVHRALKFSQFSVLHPCSIL*LYVPMALRQQLHRNKLVYQVESKQNEVLQ 385
D + P FSP + +FS+ +++ CS Y + Q HR K Q NE+ +
Sbjct: 191 DHEIEPWYFSPYPK--EFSEVDIVYICSFCFCYYGSERQFQRHREKCTLQ-HPPGNEIYR 247
Query: 384 QSILS 370
+S
Sbjct: 248 DDYIS 252
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = -1
Query: 453 LRQQLHRNKLVYQVESKQNEVLQQSILSH*LKFAEALIPVS*LGFSSQTRYMRPVYFTMC 274
+ ++L R LV +V + E+ + +L H L+PV G+ T +M + +
Sbjct: 70 ITEELARVLLVVEVFAAGAELPRAYMLRHWRSMFVMLLPVMIFGWLVSTGFMYALIPRLS 129
Query: 273 TFEMIA*KLFVVIILPLLCSHLVNK 199
E +A + P+L S +V K
Sbjct: 130 FLESLAIAACITATDPVLASSIVGK 154
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 506 SFRYFIRVQFYDYTSQWLSVSSYIEI-NLFIRLSRSK 399
+ RY +R+ + T+ W S SY EI +LF R K
Sbjct: 363 AIRYGLRMSPKEITTSWGSPKSYSEIGDLFARYCEKK 399
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.4
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = -2
Query: 335 YHDWDFHHRLDICVQYISQCV 273
YH WD+H L I + + + +
Sbjct: 3017 YHSWDYHSMLQIANEVLQETI 3037
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 253 KVICSYYTPTPM*SFGKQMRRSSGL*PPVS 164
K+ C Y T P S KQ+ +S PPVS
Sbjct: 119 KIRCVYSTKQPPQSADKQVENTSTSNPPVS 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,348
Number of Sequences: 5004
Number of extensions: 59825
Number of successful extensions: 149
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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