Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120143.Seq
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 99 4e-21
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 34 0.090
SB_56070| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_6375| Best HMM Match : DUF1388 (HMM E-Value=7.5) 28 7.9
SB_58547| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 28 7.9
SB_50290| Best HMM Match : MFS_1 (HMM E-Value=2.2e-18) 28 7.9
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 98.7 bits (235), Expect = 4e-21
Identities = 42/47 (89%), Positives = 42/47 (89%)
Frame = +2
Query: 509 ENFRALCTGEKRFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG 649
ENFR LCT EK FGYKGSSFHRIIP FMCQGGDFT HNGTGGKSIYG
Sbjct: 167 ENFRCLCTHEKGFGYKGSSFHRIIPQFMCQGGDFTKHNGTGGKSIYG 213
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 423 QVYFDVTADGEPLGRIVIKLNTDEVPKTARTLELCVLVKKGLGTRVHHF 569
+V+FD+T GRIV++L +D VP TA +KG G + F
Sbjct: 138 RVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSF 186
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 97.1 bits (231), Expect = 1e-20
Identities = 41/50 (82%), Positives = 44/50 (88%)
Frame = +2
Query: 500 ENCENFRALCTGEKRFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG 649
+ ENFRALCTGEK FGYKGSSFHR+IP FMCQGGDFT +GTGGKSIYG
Sbjct: 30 KTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGDFTRGDGTGGKSIYG 79
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/50 (42%), Positives = 26/50 (52%)
Frame = +3
Query: 420 KQVYFDVTADGEPLGRIVIKLNTDEVPKTARTLELCVLVKKGLGTRVHHF 569
K YFD+ G P GRIV++L D VPKTA +KG G + F
Sbjct: 3 KTTYFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSF 52
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 72.5 bits (170), Expect = 3e-13
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +2
Query: 512 NFRALCTGEKRFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGRY 655
NF AL E+ FGYK S FHR+I +FM QGGDFTN +GTGG SIYG+Y
Sbjct: 57 NFVALADKEQGFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKY 104
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 420 KQVYFDVTADGEPLGRIVIKLNTDEVPKTARTLELCVLVKKGLG 551
K+V+ DV+ G+P GR+++ L D PKT ++G G
Sbjct: 26 KKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFG 69
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/44 (68%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Frame = +2
Query: 527 CT--GEKRFGYKGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGR 652
CT +K FGYK S FHR+I DFM QGGDFT +GTGGKSIYG+
Sbjct: 79 CTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQ 122
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +3
Query: 420 KQVYFDVTADGEPLGRIVIKLNTDEVPKTARTLELCVLVKKGLGTRVHHF 569
K+V+FD+T GE GRI I L + KT L LV+ +GT +F
Sbjct: 27 KKVFFDITIGGEKAGRIEIGLFV--IIKTYYLL-ATRLVESLIGTNFRYF 73
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 551 YKGSSFHRIIPDFMCQGGDF 610
Y G+ FHR+IP FM QGG F
Sbjct: 60 YAGTQFHRVIPGFMVQGGGF 79
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 34.3 bits (75), Expect = 0.090
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Frame = +2
Query: 500 ENCENFRALCTGEKRFG--------YKGSSFHR 574
+ ENFRALCTGEK G YKG FHR
Sbjct: 15 KTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 462 GRIVIKLNTDEVPKTARTLELCVLVKKGLG 551
GR++ +L D+VPKTA +KG+G
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIG 31
>SB_56070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = -1
Query: 435 RNKLVYQVESKQNEVLQQSILSH*LKFAEALIPVS*LGFSSQTRYMRPVYFT-----MCT 271
R +L+ + + + ++ +L H L+ A PV +G S+TR RP MC
Sbjct: 44 RKRLLRVAKDRPRKHVRPEVLGHLLQGAPPKAPVCGIGTQSETRLCRPCGANRKGQRMCG 103
Query: 270 FEMIA*KLFVVIILPLLCSHLV 205
E A K F +++ + LV
Sbjct: 104 IERRARKRFALVLSDIAARELV 125
>SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 402 ASTQPDKQVYFDVTADGEPLGRIVIKLNTDEVPKTARTLE 521
A+T DK ++ DGE +G V++++TDE+ AR L+
Sbjct: 2 AATLEDKAIW----GDGEEMGEEVLRMSTDEIVSRARLLD 37
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -3
Query: 547 KPFFTSTQSSKVLAVFGTSSVFNFMTIRPNGSPSAVTSK*T 425
+P ++Q SKVL F SS+FN + R N AV +K T
Sbjct: 4162 RPISLTSQLSKVLEGFANSSLFNQVQNRLNDKQFAVAAKST 4202
>SB_6375| Best HMM Match : DUF1388 (HMM E-Value=7.5)
Length = 173
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 435 RNKLVYQVESKQNEVLQQSILSH*LKFAEALIPVS*LGFSSQTRYMRP 292
R +L+ + + + ++ +L H L+ A PV +G S+TR RP
Sbjct: 94 RKRLLRVAKDRPRKHVRPEVLGHLLQGAPPKAPVCGIGTQSETRLCRP 141
>SB_58547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 435 RNKLVYQVESKQNEVLQQSILSH*LKFAEALIPVS*LGFSSQTRYMRP 292
R +L+ + + + ++ +L H L+ A PV +G S+TR RP
Sbjct: 131 RKRLLRVAKDRPRKHVRPEVLGHLLQGAPPKAPVCGIGTQSETRLCRP 178
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 309 SVMKIPIMIPVSMLRRTLVNGTIYSAAALRFASTQPDKQVYFDVTADGEPLGRIVIKLNT 488
+V+K+P S L TLV + AA A TQ V VT+ L ++ + ++
Sbjct: 543 TVVKLPAQTIASSLPSTLVKVLPSATAATAQAGTQKGIVVTQGVTSAASMLAQVPVTISM 602
Query: 489 DEVPKTART 515
+ P +T
Sbjct: 603 TKAPGVVQT 611
>SB_50290| Best HMM Match : MFS_1 (HMM E-Value=2.2e-18)
Length = 534
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -3
Query: 172 PVSSQRVNIFSKGFYDLVTKNFMSSLILIYILVGTKFLYG 53
PV +R N SKG LV +F SL+L+Y+ G FL+G
Sbjct: 215 PVLLERFNE-SKGRGGLVLTSFCESLLLMYLTYG--FLFG 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,447,905
Number of Sequences: 59808
Number of extensions: 421731
Number of successful extensions: 817
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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