Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120143.Seq
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.28 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.5  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 375 IYSAAALRFASTQPD-KQVYFDVTADGEPLGRIVIKLNTDEVPKTARTLELCVLVKKGLG 551
           IYS A L+     PD K++Y D+ ++   L R V  +N  E       L+L  L++  L 
Sbjct: 19  IYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRPV--MNNTETLTVQLGLKLSQLIEMNLK 76

Query: 552 TRV 560
            +V
Sbjct: 77  NQV 79


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 314 DENPNHDTGINASANFSQWDNI 379
           DE    + G+    NF ++DNI
Sbjct: 161 DEKSLFENGVEIGINFDKYDNI 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,949
Number of Sequences: 438
Number of extensions: 4214
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)