Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120142X.Seq
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 30 0.23
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.54
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 28 0.95
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 28 1.3
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 1.7
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 27 1.7
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 27 2.2
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 27 2.9
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 27 2.9
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 26 3.8
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 3.8
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 26 5.1
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.1
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 25 6.7
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 6.7
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 25 6.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 6.7
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 25 8.8
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.8
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 8.8
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 30.3 bits (65), Expect = 0.23
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 21 QIKSMTDERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSR 194
QI +RGN + +PPPPL Y P AT NA NNA TT N +
Sbjct: 48 QIPLYWQQRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYA 104
Query: 195 SNSTNSVA 218
++ ++ +A
Sbjct: 105 NDYSSELA 112
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.54
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +3
Query: 63 NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSK 242
+TPPP +PS T+ T++ + +P + + K ++ S + A S
Sbjct: 690 STPPPTTSFPSTFTTSFITSSSLSS-----IPNNSTEVKTASTSSGTEIKTASTSSGSSS 744
Query: 243 EPTLTPANLFGTT 281
+ TPA+ TT
Sbjct: 745 SSSYTPASSTSTT 757
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 28.3 bits (60), Expect = 0.95
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Frame = +2
Query: 257 AGESIWY------NKCVDFVQKIIRYYRCNDMSELSPLMIHFINT 373
AGE++ Y N+C+ F+ + R ++C D +E L+ F+NT
Sbjct: 497 AGENVKYLLPVVVNRCI-FLARNFRIFKCMDWAEKVRLLWEFVNT 540
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +2
Query: 374 IRDMCIDTNPINVNVVKRFESEETMIRHLIRCKKSWDKATRP 499
++ + + +NP N V++ ++E ++R + KKS+ ++ P
Sbjct: 200 VQSVVVHSNPSWKNKVEQIKNESRLVRKIQELKKSYQESEHP 241
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 129 TYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLTPANLFGT 278
T N AP V +D+ + + NS P N+ +P L PAN F T
Sbjct: 27 TENLAPAVVD-NVKDDLIVSKGGNSRELARNVPVNEMVQPALGPANPFVT 75
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 574 FFARTPAANLAQTMPEIYSNRFAGT 500
FFA P +A + ++YSN++ GT
Sbjct: 236 FFASAPLTVVAAALADMYSNKYRGT 260
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 523 IFQASFVLNSLPAYAQKIFTTVALICWVKTLWP 621
+F ASF+ N P+Y IF ++L WV + P
Sbjct: 268 VFIASFIWNWFPSY---IFQALSLFAWVTWIRP 297
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 149 VRAAYDARQQNGHEPQQQHK-LGSDRTVQQEQRTDAHAGESI 271
+ A Y ++ ++P Q K +G+D V+ EQ+ D+H ESI
Sbjct: 76 IDAIYQNIEKTTNKPAQLWKAVGNDEVVESEQQ-DSHDAESI 116
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 192 RSNSTNSVAIAPYNKSKEPTLTPANLFGTTNVWILFKKLLDITGAM 329
R T + + K++E P + GT+NV+ K L+++G +
Sbjct: 176 RDPHTQEIVLQGLMKAQEDFKGPGSFLGTSNVYFAAKYNLNVSGTV 221
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 448 DTPPDSLQKELGQGNAAESLRSDSNIFQASFVLNSLPAYAQKI-FTTVALICWVKTL 615
D PD+L+ G N S S +IF+ S + + P + + FT ++ W T+
Sbjct: 117 DLLPDTLESSRGTLNRESSQESLQSIFEESGLDRNQPLFREVFCFTYGVVVLWGYTI 173
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 75 PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 218
PP+ P+ + TN+ ++A G+ PP K++ RS+S N A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -3
Query: 551 EFSTNDA*NIFESLRRDSAALPCPNSFCNESGGVSWSPPIQTALPRLR*SGSCRC 387
E S A N+ E + LP + G V+ + A P + SGSC C
Sbjct: 157 ETSAKTAENVNELFTAIAKKLPLEDKLNQARGAVNRGVNLSEARPAAQPSGSCSC 211
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 433 IGGDHDTPPDSLQKELGQGNAAESLRSDS 519
IG D PD +QKEL + AES++S +
Sbjct: 614 IGADDGKSPDQIQKEL--ADLAESVKSSA 640
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 15 RVQIKSMTDERGNFYY-NTPPPPLRYPS 95
R+Q+ T G++ + N PPP LR P+
Sbjct: 63 RLQLYKKTISEGDYNFDNVPPPELRTPT 90
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 524 IFESLRRDSAALPCPNSFCNESGGVSWSPPIQTALPRLR 408
++ ++ DS+ + +SF E+ +SWSP TAL +L+
Sbjct: 561 VYGNMVNDSS-IESSDSFVFENTSLSWSPTPSTALFQLK 598
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 161 YDARQQNGHEPQQQHKLGSDRTVQQEQR 244
Y QQN E Q HK D+ QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 45 RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 140
RG Y N PP Y SN ++YNN
Sbjct: 953 RGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 574 FFARTPAANLAQTMPEIYSNRFAGT 500
FFA P +A ++YSN+ GT
Sbjct: 235 FFASAPLTVVAAAFADMYSNKHRGT 259
>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 72 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNS 203
PP P++P + +NA N Y+P R TS ++S
Sbjct: 54 PPVNTGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSSASS 97
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 469 ATNQVAYHGLLRFKPLYHVYVDRVRVDAHVT 377
A NQ+ HGL+R + V+ + +DA T
Sbjct: 250 AGNQLIQHGLIRLLGIRRVFENDPEIDAQFT 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,684
Number of Sequences: 5004
Number of extensions: 47640
Number of successful extensions: 204
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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