Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120142X.Seq
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    32   0.42 
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494...    31   0.56 
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351...    31   0.56 
07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961     31   0.97 
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    31   0.97 
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023     29   3.0  
05_03_0069 + 8004235-8004350,8004927-8005215,8005314-8005375,800...    29   3.0  
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190...    29   3.0  
04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058...    29   3.0  
03_05_1150 - 30758981-30759778,30759970-30760729,30760823-307609...    29   3.0  
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117...    29   3.0  
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484...    29   3.0  
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453...    29   3.9  
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360...    28   5.2  
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294...    28   6.9  
12_01_1068 - 11052769-11052943,11053103-11053182,11053304-110534...    27   9.1  
12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29...    27   9.1  
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558...    27   9.1  
06_03_0189 - 17697779-17698939                                         27   9.1  
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358...    27   9.1  
02_03_0349 + 18010414-18014283                                         27   9.1  

>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 60   YNTPPPPLRY-PSNPATAIFTNAQTYN-NAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYN 233
            YN   P   Y P++P+ +  + + +Y+  +P Y P +   N   TS S S  S + +P +
Sbjct: 1697 YNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTS 1756

Query: 234  KSKEPT 251
             S  PT
Sbjct: 1757 PSYSPT 1762



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 57   YYNTPPPPLRYPSNPATAIFTNAQTYN-NAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYN 233
            Y  +P  P   P++P+ +    + +Y+  +P Y    T  +   TS S S  S + +P +
Sbjct: 1704 YSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTS 1763

Query: 234  KSKEPT 251
             S  PT
Sbjct: 1764 PSYSPT 1769


>01_05_0653 -
           23948911-23948937,23949031-23949141,23949361-23949441,
           23949865-23949984,23950088-23950252,23950344-23950493,
           23950565-23950674,23951401-23951518,23951597-23951827,
           23952345-23952524,23953639-23953908,23954930-23954979,
           23955213-23955288,23955396-23955483,23956010-23956101,
           23956200-23956529,23957484-23957593,23957810-23957907,
           23959538-23959566
          Length = 811

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 110 HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSD 220
           H HQ+  +QQ    RAA   +QQ   + QQQ +L  D
Sbjct: 100 HQHQQIQMQQMLLQRAAQQQQQQQQQQQQQQQQLHRD 136


>01_05_0652 -
           23934604-23934636,23934783-23934893,23935000-23935188,
           23935893-23936012,23936109-23936273,23936638-23936790,
           23936867-23936976,23937280-23937397,23938197-23938427,
           23938984-23939175,23939661-23939945,23940637-23940686,
           23940846-23940921,23941048-23941135,23941689-23941771,
           23941883-23942248,23942462-23942476,23942909-23943018,
           23943134-23943231,23943961-23944019
          Length = 883

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 119 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTD 250
           Q   +QQ    RAA   +QQ   + QQQ +    +  QQ+QR D
Sbjct: 120 QHIQMQQMLLQRAAQQQQQQQQQQQQQQQQQQQQQQQQQQQRRD 163


>07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961
          Length = 221

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 69  PPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDT 188
           PPPP   P +P  A+F +A+    +P    P+TR  ++ T
Sbjct: 5   PPPPSAPPPSPPRAVFPSARCCLPSPHRFLPSTRRKRLVT 44


>03_02_0594 -
           9695616-9696042,9696646-9697260,9697410-9697717,
           9700145-9700235,9700698-9700759,9701256-9702962,
           9703789-9703870,9703972-9704057,9704855-9704968,
           9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 272 WYNKCVDFVQKIIRYYRCNDMSELSPLMIHFINTIRDMCIDTNPINVNV-VKRFESE 439
           WY +C+D  Q+ +R  RC+D   + P  +  + ++   C     ++  + V RF +E
Sbjct: 473 WYRECLDLFQEFVR-VRCSDGDGVGPNGV-TVTSVLHACAQLKVVDFGIGVHRFAAE 527


>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
          Length = 620

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +2

Query: 59  LQHPSAAAEVSL*SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQE 238
           L   SA A V+L S   H H RA     A        + +N   P      G+DR+ + E
Sbjct: 540 LPRRSACASVALKSSGCHHHVRAGAAAAAHGSVRTSRQSRNNAPPMAPTIRGADRSSEGE 599

Query: 239 QR 244
           +R
Sbjct: 600 RR 601


>05_03_0069 +
           8004235-8004350,8004927-8005215,8005314-8005375,
           8005516-8005602,8005667-8005723,8005940-8006004,
           8006292-8006320
          Length = 234

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 72  PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPT 251
           PPP  +  NP+T I     +  + P   P  +  +K  T +++ST   AI     S E T
Sbjct: 146 PPPAPHTDNPSTTIHNTGASSKSTP---PEISLADKTPTEKTSSTRKRAIDFTKDSIEET 202


>05_01_0251 +
           1901709-1901864,1901968-1901999,1902534-1902664,
           1902740-1902821,1902928-1903054,1903369-1903686,
           1903785-1903846,1903988-1904074,1904139-1904195,
           1906113-1906197,1906916-1907185,1908158-1908254,
           1908390-1908436,1908826-1908939,1909024-1909117,
           1909360-1909457,1910356-1910455,1911445-1911521,
           1911824-1913122
          Length = 1110

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 72  PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPT 251
           PPP  +  NP+T I     +  + P   P  +  +K  T +++ST   AI     S E T
Sbjct: 293 PPPAPHTDNPSTTIHNTGASSKSTP---PEISLADKTPTEKTSSTTKRAIDFTKDSIEET 349


>04_04_1393 -
           33204699-33204806,33204927-33205164,33205581-33205825,
           33206229-33206339,33206645-33206743,33207684-33207731,
           33207882-33207999,33208085-33208115,33208700-33208806,
           33209644-33209725,33210010-33210104,33210579-33210664,
           33211074-33211195,33211613-33211824,33212362-33212510,
           33212755-33212982
          Length = 692

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 302 KIIRYYRCNDMSELSPLMIHFINTIRDM 385
           KII  Y+ N+++++S L  HFI+ + D+
Sbjct: 599 KIIESYKSNNVNQVSNLCQHFIDLVNDL 626


>03_05_1150 -
           30758981-30759778,30759970-30760729,30760823-30760920,
           30761997-30762521
          Length = 726

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
 Frame = +1

Query: 469 QKELGQGNAAESLRSDSNI------FQASFVLNSLPAYAQKIFTTVALICWVKTLWP 621
           +KE G G    S R  + +      F ASF   +LP Y   I T  +  CW    WP
Sbjct: 212 EKEGGDGGKGSSSRGPTRMRFFLIFFFASFAYYALPGYLLPILTFFSWACWA---WP 265


>03_05_0898 +
           28610123-28610203,28611190-28611271,28611666-28611721,
           28612253-28612366,28612484-28612546,28612633-28612752,
           28612850-28612950,28613097-28613156,28613243-28613342,
           28613421-28613575,28613661-28613756,28614269-28614403,
           28614510-28614573,28614648-28614729,28615038-28615213,
           28615302-28615378,28615637-28615769,28615939-28616055,
           28616394-28616398,28616564-28616684,28616711-28617751
          Length = 992

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 15  RVQIKSMTDERGNFYYNTPPPP---LRYPSNPATAIFTNAQTYNNAPG 149
           +V I+S+   RG FY+N  P     L +   P T +F +    +  PG
Sbjct: 821 KVPIRSIAACRGKFYFNATPESVGVLEFTPTPTTPVFGSIAIADPLPG 868


>03_03_0168 -
           15047383-15047847,15048085-15048192,15048313-15048464,
           15048555-15048752,15049553-15050856,15051281-15051354,
           15051458-15051492,15052853-15053015
          Length = 832

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
 Frame = +3

Query: 69  PPPPLRYPSNPATA----IFTNAQTYNNAP-------GYVPPTTRDNKMDTSRSNSTNS- 212
           PPPP   P +PAT      F  AQ   N P        ++PP      + TS S S    
Sbjct: 721 PPPPAAAPISPATTPKEPPFQQAQANQNMPRQAAAPREHLPPPPPLTTLPTSDSGSAKER 780

Query: 213 VAIAPYNKSKEPTLTPANLFGTTN 284
           +   P  + + P +T  +LF  T+
Sbjct: 781 LPPTPKKQPEPPVVTLDDLFRKTH 804


>02_04_0005 -
           18843061-18843201,18843309-18843440,18844457-18845315,
           18845884-18845973,18846748-18846869,18846950-18847049,
           18847151-18847205,18847275-18847365,18847453-18847572,
           18847681-18847780,18847890-18848018,18848099-18848201,
           18848670-18848743,18848848-18848933,18849297-18849358,
           18849454-18849541,18849937-18850029
          Length = 814

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 45  RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTS 191
           +G+  Y  PPPP   P     A+F    +      Y PPT R+  ++ S
Sbjct: 665 KGSTCYPPPPPPSSTPPVEPVAVFPPPPSPACGVYYPPPTVREPVINRS 713


>01_01_0489 +
           3608720-3608811,3609326-3609431,3609518-3609581,
           3609905-3609965,3610017-3610144,3610236-3610385,
           3610537-3610791,3611060-3611265,3611469-3611696,
           3612161-3612259
          Length = 462

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -1

Query: 445 GLLRFKPLYHVYVDRVRVDAHVTNSVYKMNHERTKF*HVIAPVISNNFLNKIHTFVVPNR 266
           GLLR  P++ V++D VRV    +  +Y++ +   K+   +A + S +  N    +  PN 
Sbjct: 266 GLLRTAPVHEVHLDLVRVS---SGKIYRLRNPSRKY---LASLSSYDSSNPTKDWGFPNI 319

Query: 265 FA 260
           +A
Sbjct: 320 YA 321


>12_02_0998 +
           25126114-25126596,25129213-25129339,25129349-25129459,
           25130122-25130270,25130356-25130643,25130753-25130941,
           25131445-25131619,25132219-25132316
          Length = 539

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
 Frame = +3

Query: 69  PPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDN---KMDTSRSNSTNSVAIAPYNKS 239
           PPPP  +PSN    +      Y   P ++PP  +D+     D           I+ Y + 
Sbjct: 310 PPPPWGHPSN----VPPGGPGYGGNPQFMPPRPQDHYYPPPDVPPVEKQPHYGISSYGRD 365

Query: 240 KEPTLTP 260
             PT  P
Sbjct: 366 APPTGAP 372


>12_01_1068 -
           11052769-11052943,11053103-11053182,11053304-11053401,
           11053487-11053627,11053701-11053841,11053933-11054017,
           11055296-11055826,11055926-11055940
          Length = 421

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 60  YNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAP 227
           ++ PPP   Y +  A   ++++ +Y       PP   D  + +S S    +VA AP
Sbjct: 77  WDPPPPSSPYSAGHAADEYSSSSSYRRRGASAPP-AEDVVVSSSYSRPAAAVASAP 131


>12_01_0035 -
           295988-296408,296645-296813,296929-296965,297097-297173,
           297391-297631
          Length = 314

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 135 NNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTL 254
           NN       TT + +   S+  +++S ++ PY +SK P L
Sbjct: 20  NNDGSSTSSTTEEEESGESQRRTSSSSSVRPYIRSKNPRL 59


>09_04_0151 -
           15154063-15154296,15155616-15155660,15155749-15155820,
           15155932-15156024,15156282-15156351,15156716-15156912,
           15156946-15157215,15158620-15158757,15158841-15158930,
           15159041-15159247,15159987-15160154,15160300-15160503,
           15160584-15160670,15160748-15160861,15161689-15161835,
           15161914-15162063,15162211-15162276,15162376-15162480,
           15162625-15162798,15162930-15163154,15163534-15163590,
           15163858-15164019,15164234-15164302,15164391-15164471,
           15164823-15164925,15165011-15165156,15165285-15165359,
           15165441-15165508,15165586-15165667,15165745-15165858,
           15166358-15166476,15166692-15166781,15166862-15166988
          Length = 1382

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 134 QQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQE 238
           QQ+A     Y+  QQN    Q+Q K+ +++  +QE
Sbjct: 588 QQKASFHEKYEELQQNALVAQEQAKIANEKLSKQE 622


>06_03_0189 - 17697779-17698939
          Length = 386

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 69  PPPPLRYPSNPATAIFTNAQTYNNAPGYVPPT 164
           PPPPL   ++ + A    A T + +PG  P T
Sbjct: 293 PPPPLPSAADKSPATAAEAATASQSPGLSPTT 324


>06_01_0501 -
           3587390-3587528,3587922-3588031,3588122-3588187,
           3588293-3588410,3588499-3588554,3588647-3588766,
           3588937-3589035,3589443-3589490,3589534-3589545,
           3590353-3590418,3591412-3591471,3592061-3592162,
           3592405-3592426,3592959-3593041,3593166-3593293,
           3593775-3593881,3594376-3594845
          Length = 601

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 347 PLMIHFINTIRDMCIDTNPINVNVVKRFESEETM 448
           P  I +++TIR MC+  +P   NV  R   E++M
Sbjct: 237 PCFILWMSTIRTMCLSNHPGLDNVCTRKPCEQSM 270


>02_03_0349 + 18010414-18014283
          Length = 1289

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = +2

Query: 290 DFVQKIIRYYRCNDMSELSPLMIHFINTIRDMCIDTNPINVNVVKRFESEETMIRHLIRC 469
           D + ++ R    N+ + +S       NTIR +C+D   I++ VV++  S+   +R LI  
Sbjct: 536 DLLHELARSASVNECARVSISSEKIPNTIRHLCLDV--ISLTVVEQI-SQSKKLRTLIMH 592

Query: 470 KKSWDKA 490
            +  D+A
Sbjct: 593 FQEQDQA 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,949,538
Number of Sequences: 37544
Number of extensions: 333716
Number of successful extensions: 1391
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)