Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120142X.Seq
(622 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 31 1.00
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16) 31 1.00
SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06) 29 3.0
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 29 3.0
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031) 29 3.0
SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 29 3.0
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3) 29 4.0
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) 28 5.3
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2) 28 5.3
SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 28 7.0
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 28 7.0
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 7.0
SB_25663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8) 28 7.0
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 27 9.3
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 27 9.3
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 27 9.3
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 27 9.3
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 30.7 bits (66), Expect = 1.00
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 116 HQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDAH 256
HQ+ QQ+ ++ Y +QQ H+ QQQ +L + +QQ+QR H
Sbjct: 1594 HQQYTNQQQQQI--LYQQQQQLQHQ-QQQQQLQQQQQLQQQQRLPQH 1637
>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
Length = 814
Score = 30.7 bits (66), Expect = 1.00
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 116 HQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDAH 256
HQ+ QQ+ ++ Y +QQ H+ QQQ +L + +QQ+QR H
Sbjct: 248 HQQYTNQQQQQI--LYQQQQQLQHQ-QQQQQLQQQQQLQQQQRLPQH 291
>SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 60 YNTPPPPLRYPSNPATAIFTNAQ 128
YNT PPPL +P++P ++ Q
Sbjct: 58 YNTYPPPLSHPNDPTRGFYSPVQ 80
>SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 90 PSNPATAIFTNA-QTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLTP 260
P++ T F N+ + N + P + RDN +DTS ++ + + NK++ +TP
Sbjct: 132 PNDNNTLSFDNSFNPFRNKSTWTPSSGRDNSLDTSPNSVKLQIQNSTLNKTRS-NITP 188
>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
Length = 575
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 39 DERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRD-NKMDTSRSN 200
+ERG ++ +PS P TA FTN + V P +R+ N++ SRS+
Sbjct: 511 EERGYGHFIKTRTGDPHPSYPLTASFTNYPLLSTLDPLVAPLSRELNQLPASRSH 565
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Frame = +3
Query: 57 YYNTPPPPLRYP-----SNPATAIFTNAQTYNNAPGYVP--PTTRDNKMDTSRSNSTNSV 215
Y TP P + P S PA + Q + P Y P P + +M + S ST S
Sbjct: 57 YTATPAPAQQAPHTTAASQPAPYTPASGQPASYTPAYTPYTPASTVGRMPPTTSQSTPSP 116
Query: 216 AIAPYNKSKEPTLTPANLFGTT 281
AP+ + + TP L GT+
Sbjct: 117 --APFFQQQPLVPTPVTLGGTS 136
>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
Length = 592
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/81 (24%), Positives = 40/81 (49%)
Frame = +3
Query: 18 VQIKSMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRS 197
V+ K + E+ + +P P +R S I+T + T + Y + R +++ TS+
Sbjct: 209 VEEKIESSEKFSEKSESPEPSVRVDSETGDEIYTVSATPSETESYATTSMR-SRVSTSKG 267
Query: 198 NSTNSVAIAPYNKSKEPTLTP 260
+S+ SV+ + ++P L P
Sbjct: 268 SSSPSVSTTA-SILEQPKLVP 287
>SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 917
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 72 PPPLRYPSN-PATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNS 212
PP R+PS P+ NA + +N P Y P D+ D S + +S
Sbjct: 550 PPEYRFPSEEPSPYAEENAISRSNPPVYTPKEEDDDDDDDEESETEDS 597
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 119 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTD 250
Q QQ + +D +QQ H+ QQQH QQ+QR D
Sbjct: 1078 QHDQQQQNTGQQQQHDKQQQ--HDQQQQHDQQQQHDQQQQQRHD 1119
>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
Length = 312
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Frame = +3
Query: 90 PSNPATAIFTNAQTYNNAPGY-------VPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEP 248
PS P ++ + + T P + +PPT + +S S T V +P ++
Sbjct: 49 PSLPTSSTHSTSPTVQTTPAFTTSPATILPPTAKTTSSTSSTSKPTEDVGTSPQPSTENE 108
Query: 249 TLTP 260
T TP
Sbjct: 109 THTP 112
>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 697
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 152 RAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDAH 256
R YD R++ QQQH L R QQ+QR D H
Sbjct: 214 RERYDRREKAAQRQQQQH-LQQHRQ-QQQQRLDRH 246
>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 110 HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDAH 256
H HQ + QQ+ + + +QQ + QQQ + + QQ+Q+ H
Sbjct: 311 HQHQHQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQQQQQQQHQHH 359
>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 267
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 69 PPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEP 248
PP PS +T +T+ +Y Y P T TS +++T+ + Y +
Sbjct: 134 PPRYTPTPSYTSTTSYTSTTSYTPTTSYTP--TPSYTSTTSYTSTTSYTSTTSYTPTPSY 191
Query: 249 TLTPA 263
T TP+
Sbjct: 192 TSTPS 196
>SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 348
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 117 TNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLTPANL 269
T++++ N+ G +P T DN + N A A + +K PA++
Sbjct: 61 TSSESSTNSTGAIPATKPDNSKPQDKETELNQTASATPSNAKPRGKKPASV 111
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/73 (24%), Positives = 23/73 (31%)
Frame = +3
Query: 63 NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSK 242
NT PP P+ P T T PP T T+ + + P +
Sbjct: 66 NTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTP 125
Query: 243 EPTLTPANLFGTT 281
T TP TT
Sbjct: 126 PGTTTPTKPTTTT 138
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 66 TPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
+P P PS+P+ + + + + +PGY P + S S S S + +P + S
Sbjct: 413 SPSSPAFMPSSPSMSPASPSYS-PTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYS 471
Query: 246 PT 251
PT
Sbjct: 472 PT 473
>SB_25663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 463 SLQKEL-GQGNAAESLRSDSNIFQASFVLNSLPA 561
SL EL G GN S RSD N F ++ PA
Sbjct: 5 SLNTELIGSGNDCASYRSDKNNFNGIYIFGEHPA 38
>SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8)
Length = 279
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 75 PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNK 236
PP + +P + N +++ P Y PP D + T RS S +V A Y +
Sbjct: 144 PPSSHSRSPNSPGSPNPTLFSH-PSYYPPPPLDFQAGTKRSASCMAVVEADYGR 196
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 48 GNFYYNTPPPPLRYPSNPATAIF-TNAQTYNNAPGYVPPTTRDNKMD 185
G + PPP L++ N + A+F ++ N++ + P ++R D
Sbjct: 268 GRYQRKGPPPRLKFSRNSSPALFPASSMCENSSLSFYPASSRGGSPD 314
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +2
Query: 98 SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRT 247
S N H+ R ++++R+R +A + +P+++ +L R ++ T
Sbjct: 3012 SRNDHVQSRFGAREKSRIRRGIEAILRGRTKPRRRRRLNKSRRRTHKKTT 3061
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +3
Query: 51 NFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTN 209
+F PPPP R PS T A ++P TR NK SR+ N
Sbjct: 734 SFAPQRPPPPTRTPSGKDRPHSTTA----TPTLHIPERTRRNKKPKSRAEVVN 782
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3
Query: 69 PPPPLRYPSNP 101
PPPPLRYP +P
Sbjct: 419 PPPPLRYPPSP 429
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,386,015
Number of Sequences: 59808
Number of extensions: 378567
Number of successful extensions: 1741
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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