Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120142X.Seq
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024790-4|AAF60636.1| 121|Caenorhabditis elegans Hypothetical ... 37 0.013
AC024790-5|AAF60640.2| 119|Caenorhabditis elegans Hypothetical ... 36 0.031
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr... 32 0.38
AC024853-4|AAK68586.1| 746|Caenorhabditis elegans Hypothetical ... 31 0.50
Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical pr... 31 0.88
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 30 1.2
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 30 1.2
L10986-7|AAA28014.2| 362|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z70205-4|CAA94115.2| 528|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70034-10|CAI79119.2| 560|Caenorhabditis elegans Hypothetical p... 29 2.7
Z70034-3|CAA93860.2| 620|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70034-2|CAA93854.3| 623|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 29 2.7
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 29 2.7
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 3.5
U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical pr... 29 3.5
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 29 3.5
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 3.5
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 3.5
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical... 29 3.5
AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical... 29 3.5
Z74030-16|CAI79165.1| 481|Caenorhabditis elegans Hypothetical p... 28 4.7
Z74030-15|CAI79164.1| 477|Caenorhabditis elegans Hypothetical p... 28 4.7
Z74030-7|CAA98447.2| 559|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z74030-6|CAA98444.2| 508|Caenorhabditis elegans Hypothetical pr... 28 4.7
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 4.7
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 4.7
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 4.7
Z81056-1|CAB02902.1| 319|Caenorhabditis elegans Hypothetical pr... 28 6.2
AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 28 6.2
Z81592-8|CAB04730.1| 365|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z80221-2|CAB02310.1| 405|Caenorhabditis elegans Hypothetical pr... 27 8.2
X54355-1|CAA38240.1| 382|Caenorhabditis elegans lin-11 protein ... 27 8.2
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 27 8.2
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 27 8.2
>AC024790-4|AAF60636.1| 121|Caenorhabditis elegans Hypothetical
protein Y47D7A.7 protein.
Length = 121
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +3
Query: 51 NFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGY--VPP------TTRDNKMDTSRSNST 206
N Y TP P PS P + A TY + P Y PP T+ DN+ DT ++T
Sbjct: 24 NSYPTTPSYPTPPPSYPTPKKYPVAPTYPSTPSYSAQPPPAPSAYTSSDNQEDTESESAT 83
Query: 207 NSVAIAPYNK 236
++ A + Y K
Sbjct: 84 SASATSEYRK 93
>AC024790-5|AAF60640.2| 119|Caenorhabditis elegans Hypothetical
protein Y47D7A.2 protein.
Length = 119
Score = 35.5 bits (78), Expect = 0.031
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +3
Query: 51 NFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGY-VPP-----TTRDNKMDTSRSNSTNS 212
N Y TP P PS P + A TY + P Y PP ++ DN+ DT + T +
Sbjct: 24 NSYPTTPSYPTPPPSYPTPKKYPVAPTYPSTPSYSAPPAQSAYSSSDNQEDTESESVTGA 83
Query: 213 VAIAPYNK 236
+ + Y K
Sbjct: 84 ASTSEYRK 91
>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical
protein K02C4.3 protein.
Length = 1307
Score = 31.9 bits (69), Expect = 0.38
Identities = 24/81 (29%), Positives = 34/81 (41%)
Frame = +3
Query: 102 ATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLTPANLFGTT 281
+T N+ PGY + + +S S Y KEP+ TP +LFGT
Sbjct: 341 STTTAPNSDIIGAPPGY---NAANLSLPSSSHVDPKSTLNPMYVNEKEPSSTPTSLFGTR 397
Query: 282 NVWILFKKLLDITGAMTCQNL 344
+ I + +D T A T NL
Sbjct: 398 SKTIEVNESMD-TEAATSSNL 417
>AC024853-4|AAK68586.1| 746|Caenorhabditis elegans Hypothetical
protein Y71F9AR.3 protein.
Length = 746
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 21 QIKSMTDERGNFYYNTPP--PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSR 194
Q + + +F+ N P P R S P+++ F+N+ N PPTT D +TSR
Sbjct: 174 QAYDIVNHDADFFANELPSTPSEREASPPSSSQFSNSAAPNLPETKQPPTTTDQYSETSR 233
Query: 195 S 197
+
Sbjct: 234 T 234
>Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical
protein C10C6.3 protein.
Length = 319
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 117 TNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
TN T + GYVPP ++ + N+VA+ P K K+
Sbjct: 151 TNVYT-GSREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKD 192
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 63 NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMD 185
++PPP PS A+A+ N + + A +VPPT ++++
Sbjct: 4666 SSPPPSNDQPSTSASAMSPNRPSTSAASSFVPPTFDQDEIE 4706
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 63 NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMD 185
++PPP PS A+A+ N + + A +VPPT ++++
Sbjct: 4666 SSPPPSNDQPSTSASAMSPNRPSTSAASSFVPPTFDQDEIE 4706
>L10986-7|AAA28014.2| 362|Caenorhabditis elegans Hypothetical
protein F10E9.3 protein.
Length = 362
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 403 DQRKRGKAV*IGGDHDTPPDSLQKELGQGNAAESLRSDSNIFQASFVLNSL 555
DQ V +GGDH+T DS+Q+ + NA + S NI +AS N L
Sbjct: 277 DQSPVRMQVMVGGDHETNGDSIQEAMELANAQK--ESIGNIARASSHHNML 325
>Z70205-4|CAA94115.2| 528|Caenorhabditis elegans Hypothetical
protein C11H1.5 protein.
Length = 528
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +2
Query: 272 WYNKCVDFVQKIIRYYRCNDMSELSPLMIHFINTIRDMCIDTNPINVNVVKRFESEE 442
WY V Y RC+ M E+ L I F +D+C + + + E+E+
Sbjct: 471 WYRPRGSSVCVPYHYPRCSSMEEMEELPILFEQNCQDLCFSQHEKRIAPLFTLETED 527
>Z70034-10|CAI79119.2| 560|Caenorhabditis elegans Hypothetical
protein C18E9.3c protein.
Length = 560
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 107 GHIHQRANLQQRARVRAAYDARQQNGHEPQQQHK--LGSDRTVQQEQRTDAHA 259
G +H + N Q +++ QQ H+P QQH+ + QQ QR ++
Sbjct: 330 GQLHHQMNAGQLHQIQQQQQQCQQIQHQPPQQHQQVINGQVMNQQNQRNQVNS 382
>Z70034-3|CAA93860.2| 620|Caenorhabditis elegans Hypothetical
protein C18E9.3b protein.
Length = 620
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 107 GHIHQRANLQQRARVRAAYDARQQNGHEPQQQHK--LGSDRTVQQEQRTDAHA 259
G +H + N Q +++ QQ H+P QQH+ + QQ QR ++
Sbjct: 390 GQLHHQMNAGQLHQIQQQQQQCQQIQHQPPQQHQQVINGQVMNQQNQRNQVNS 442
>Z70034-2|CAA93854.3| 623|Caenorhabditis elegans Hypothetical
protein C18E9.3a protein.
Length = 623
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 107 GHIHQRANLQQRARVRAAYDARQQNGHEPQQQHK--LGSDRTVQQEQRTDAHA 259
G +H + N Q +++ QQ H+P QQH+ + QQ QR ++
Sbjct: 393 GQLHHQMNAGQLHQIQQQQQQCQQIQHQPPQQHQQVINGQVMNQQNQRNQVNS 445
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = +3
Query: 30 SMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTN 209
S + R + Y PPP YP+NP Y P Y DN+ + S N
Sbjct: 187 SSPNNRTSLYNPQPPPKTGYPTNPRVPYNPPQPNYTRQPTY----PEDNRAPYKPTRSPN 242
Query: 210 S 212
+
Sbjct: 243 T 243
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +3
Query: 66 TPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
TPPPP P PA A+ AQ AP P +T++ N+V AP +
Sbjct: 374 TPPPPAPPP--PAPAVPEEAQAPTPAPEEAPEA--QIPAETAQIPPENAVPEAP--EEPA 427
Query: 246 PTLTP 260
PT TP
Sbjct: 428 PTTTP 432
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +3
Query: 66 TPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
TPPPP P PA A+ AQ AP P +T++ N+V AP +
Sbjct: 386 TPPPPAPPP--PAPAVPEEAQAPTPAPEEAPEA--QIPAETAQIPPENAVPEAP--EEPA 439
Query: 246 PTLTP 260
PT TP
Sbjct: 440 PTTTP 444
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +3
Query: 66 TPPP----PLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYN 233
TPPP P+ YP A T Q PPTT ++T ST S+A + +
Sbjct: 96 TPPPSTLPPITYPRPTVGAPITTQQVLITETTTQPPTT-TTTLETPAPESTPSMAPSHTD 154
Query: 234 KSKEPTLTPA 263
+ P T A
Sbjct: 155 PTPAPETTVA 164
>U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical
protein F59A3.2b protein.
Length = 687
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +3
Query: 72 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNK--MDTSRSNSTNSVAIAPYNKS-- 239
PPP Y S+P A+F Y P +P T N+ D S + S ++K+
Sbjct: 555 PPPQIY-SSPGQALFNPTNLYPTPPSSLPNTYVPNQESFDESVNRDKKSFIFNNHSKANF 613
Query: 240 KEPTLT 257
PTLT
Sbjct: 614 SNPTLT 619
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +3
Query: 72 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNK--MDTSRSNSTNSVAIAPYNKS-- 239
PPP Y S+P A+F Y P +P T N+ D S + S ++K+
Sbjct: 555 PPPQIY-SSPGQALFNPTNLYPTPPSSLPNTYVPNQESFDESVNRDKKSFIFNNHSKANF 613
Query: 240 KEPTLT 257
PTLT
Sbjct: 614 SNPTLT 619
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 54 FYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKM 182
F+ T PP Y + PAT F Q Y P + + N+M
Sbjct: 389 FFQTTRPPMPTYATTPATTQFIPKQIYTTPPQMPKNSIKINQM 431
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 54 FYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKM 182
F+ T PP Y + PAT F Q Y P + + N+M
Sbjct: 486 FFQTTRPPMPTYATTPATTQFIPKQIYTTPPQMPKNSIKINQM 528
>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
protein W03F11.4 protein.
Length = 1406
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 72 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRS 197
PPP P + A ++ NAP P TT ++ ++S S
Sbjct: 833 PPPAPQPPSSAASLTPAPSAAQNAPSIAPSTTEASEEESSGS 874
>AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical
protein Y47D7A.11 protein.
Length = 129
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +3
Query: 60 YNTPPPPLRYPSN-PATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 218
Y TPPP P P + + Y P Y P + +S S S N VA
Sbjct: 32 YPTPPPSYPTPKKYPVAPTYPSPPAYAQKPSYSAPPPPAPSVYSSSSFSDNEVA 85
>Z74030-16|CAI79165.1| 481|Caenorhabditis elegans Hypothetical
protein D1054.9e protein.
Length = 481
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +3
Query: 90 PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLTPANL 269
P P+T + T T AP TT KM S + +++ ++EPT PA
Sbjct: 125 PMTPSTVVPTTTTTTTQAP-----TTTTKKMPKSLKSIYSTIVAKTTTTTEEPTKAPATT 179
Query: 270 FGTTN 284
T+
Sbjct: 180 TQATS 184
>Z74030-15|CAI79164.1| 477|Caenorhabditis elegans Hypothetical
protein D1054.9d protein.
Length = 477
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +3
Query: 90 PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLTPANL 269
P P+T + T T AP TT KM S + +++ ++EPT PA
Sbjct: 125 PMTPSTVVPTTTTTTTQAP-----TTTTKKMPKSLKSIYSTIVAKTTTTTEEPTKAPATT 179
Query: 270 FGTTN 284
T+
Sbjct: 180 TQATS 184
>Z74030-7|CAA98447.2| 559|Caenorhabditis elegans Hypothetical
protein D1054.9b protein.
Length = 559
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +3
Query: 90 PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLTPANL 269
P P+T + T T AP TT KM S + +++ ++EPT PA
Sbjct: 125 PMTPSTVVPTTTTTTTQAP-----TTTTKKMPKSLKSIYSTIVAKTTTTTEEPTKAPATT 179
Query: 270 FGTTN 284
T+
Sbjct: 180 TQATS 184
>Z74030-6|CAA98444.2| 508|Caenorhabditis elegans Hypothetical
protein D1054.9a protein.
Length = 508
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +3
Query: 90 PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLTPANL 269
P P+T + T T AP TT KM S + +++ ++EPT PA
Sbjct: 125 PMTPSTVVPTTTTTTTQAP-----TTTTKKMPKSLKSIYSTIVAKTTTTTEEPTKAPATT 179
Query: 270 FGTTN 284
T+
Sbjct: 180 TQATS 184
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 114 FTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
F N T NN + P DN ++ +NS N+ A A N S+E
Sbjct: 570 FVNQNTQNNFKPFSPNKAADNSRNSWNNNSQNNSA-ASQNISRE 612
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 114 FTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
F N T NN + P DN ++ +NS N+ A A N S+E
Sbjct: 473 FVNQNTQNNFKPFSPNKAADNSRNSWNNNSQNNSA-ASQNISRE 515
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 114 FTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
F N T NN + P DN ++ +NS N+ A A N S+E
Sbjct: 484 FVNQNTQNNFKPFSPNKAADNSRNSWNNNSQNNSA-ASQNISRE 526
>Z81056-1|CAB02902.1| 319|Caenorhabditis elegans Hypothetical
protein F09F3.1 protein.
Length = 319
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 284 CVDFVQKIIRYYRCNDMSELSPLMIHFINTIRDMCIDTN 400
C + YY M +SPL + +NT+ +C+ N
Sbjct: 80 CATLTFSQVNYYLNRTMGMVSPLWSYILNTLIPICLSCN 118
>AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical
protein Y55B1BR.1 protein.
Length = 543
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 87 YPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSN 200
+PS +T ++ ++ Y+PP TRD ++ SR+N
Sbjct: 466 FPSLVSTG--NTVESSEDSDTYIPPPTRDQNIERSRNN 501
>Z81592-8|CAB04730.1| 365|Caenorhabditis elegans Hypothetical
protein T16G1.8 protein.
Length = 365
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 60 YNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPP 161
Y+ PPPL PS+P+ +A +Y+ P P
Sbjct: 103 YSMAPPPLILPSSPSYVAPVSAPSYSLTPSISIP 136
>Z80221-2|CAB02310.1| 405|Caenorhabditis elegans Hypothetical
protein ZC247.3 protein.
Length = 405
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +3
Query: 15 RVQIKSMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDN 176
R I M FY PP +++ +P T N +T AP + PT N
Sbjct: 315 RDDIVDMFPNDQQFYPPPPPSNVQFFCDPYTTSPNNPETIQMAPQFAVPTENMN 368
>X54355-1|CAA38240.1| 382|Caenorhabditis elegans lin-11 protein
protein.
Length = 382
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +3
Query: 15 RVQIKSMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDN 176
R I M FY PP +++ +P T N +T AP + PT N
Sbjct: 292 RDDIVDMFPNDQQFYPPPPPSNVQFFCDPYTTSPNNPETIQMAPQFAVPTENMN 345
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
protein 27,isoform a protein.
Length = 1129
Score = 27.5 bits (58), Expect = 8.2
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = +2
Query: 50 QFLLQHPSAAAEVSL*SGNGHIHQR---ANLQQRARVRAAY-----DARQQNGHEPQQQH 205
Q LQ A +V H HQ+ A QQ+ R AA + R+Q E ++QH
Sbjct: 873 QMALQQQLEAHQVQFQLMMAHQHQQKMIAEQQQQQRHAAAQQLREREQREQRERERERQH 932
Query: 206 KLGSDRTVQQEQRTDAHA 259
+ + + + Q+Q+ A A
Sbjct: 933 QQQAQQALHQQQQQHAAA 950
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 27.5 bits (58), Expect = 8.2
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = +2
Query: 50 QFLLQHPSAAAEVSL*SGNGHIHQR---ANLQQRARVRAAY-----DARQQNGHEPQQQH 205
Q LQ A +V H HQ+ A QQ+ R AA + R+Q E ++QH
Sbjct: 873 QMALQQQLEAHQVQFQLMMAHQHQQKMIAEQQQQQRHAAAQQLREREQREQRERERERQH 932
Query: 206 KLGSDRTVQQEQRTDAHA 259
+ + + + Q+Q+ A A
Sbjct: 933 QQQAQQALHQQQQQHAAA 950
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,479,038
Number of Sequences: 27780
Number of extensions: 286796
Number of successful extensions: 1233
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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