Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120139.Seq
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.0  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.4  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   7.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.4  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   7.4  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   7.4  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.8  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 117 LGSTEI-VPAGTGVMKISVSYDTTLKDMRLPFSIFRIFRLKESSTSRRHASFQ 272
           LGS  + VP GT    +  +   T++  R P+S F+   L++      + S Q
Sbjct: 219 LGSMGVSVPCGTSGNPLEWTGQVTVRKKRKPYSKFQTLELEKEFLFNAYVSKQ 271


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 474 TTVANKTQ*ERFYRRHDPRATNRRINPNTSNLPQ 575
           T  ANK   + F+ ++  +  +R  N N + LP+
Sbjct: 381 TKSANKIAMKLFWAQYTNKMIDRLKNANNNELPE 414


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 360 LVNVSAVHTKNPPCRLMHASGSAS 289
           L  VSA+  KNP  ++M + G A+
Sbjct: 82  LKRVSALKEKNPNLKVMLSVGGAT 105


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 685  PDKSWP*INNPIFKKVCAKIAR 620
            P  SW  I+N  +KKV +  +R
Sbjct: 2369 PHDSWADIDNEFYKKVVSYKSR 2390


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 343 GPHEKSTVSPDARIGIG 293
           GP   +  +PD+R+G G
Sbjct: 137 GPVRPAACTPDSRVGYG 153


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 116 QRVQNRLIPFVTELV 72
           +R ++ LIPF+TE +
Sbjct: 47  ERTRSELIPFLTETI 61


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 190 KICDYHFLFLGYLDLKKV 243
           K+ DYH   LG+    KV
Sbjct: 131 KLVDYHHQLLGHFGATKV 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,221
Number of Sequences: 336
Number of extensions: 4052
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)