Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120139.Seq
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    29   0.65 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    29   0.65 
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    28   1.5  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.0  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   4.6  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    25   8.0  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   8.0  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   8.0  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 426 GYRDALLQIFICVSSRLNIHHELVNV 349
           GYR      ++CV S  ++H+E VN+
Sbjct: 67  GYRPPSFSFYLCVKSIFHVHNESVNI 92


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -1

Query: 539  ICCPWVMAPVESFLLCFVRDGRPEKSRAILTLQARLRVDIVTRYSKFLYAYL 384
            IC P++     S LL ++R  R  +     T Q RLR  IV RYS   ++ L
Sbjct: 1833 ICIPYIDR-WHSVLLFWLRPSRQIRPPIFSTKQNRLRKRIVRRYSALYFSIL 1883


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 560 SIWVNASICCPWVMAPVESFLLCFVRDGRPEKSRAILTLQARL 432
           ++ +N+ I CPW    V+ F +  VR     +SR++   Q RL
Sbjct: 632 TVTLNSGISCPWYGTNVKLFTVREVRQPTILQSRSLGEFQGRL 674


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 108 YPLLGSTEIVPAGTGVMKISVSYDTTL 188
           YP++G   ++ AGTG M I++ YDT +
Sbjct: 418 YPMIGGWIVLLAGTGSM-IAIYYDTPI 443


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 551 VNASICCPWVMAPVESFLLCFVR 483
           +N ++CC  +  P++SF+L F+R
Sbjct: 491 LNLNVCC-CIAEPIQSFILSFLR 512


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -3

Query: 450 NTAGASPRGYRDALLQIFICVSSRLNIHHELVNVSAVHTKNPPCRLMHASGSASMH 283
           NT  AS   Y       FI +S  LN+ +   + S   +  PP +++      S H
Sbjct: 184 NTREASNNTYLYGFSNNFINISRTLNLRYPSASASISDSLPPPYQVLSVPSVTSTH 239


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 417 DALLQIFICVSSRLNIHH 364
           DA L++F  VSSRL  HH
Sbjct: 740 DARLRLFHTVSSRLRTHH 757


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 108 YPLLGSTEIVPAGTGVMKISVSYDTTL 188
           YP++G   ++ AGTG M I++ Y+T +
Sbjct: 418 YPMIGGWIVLLAGTGSM-IAIYYNTDI 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,365
Number of Sequences: 5004
Number of extensions: 67347
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)