Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120139.Seq
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0583 + 24078766-24079800,24080585-24081643                       29   4.8  
01_05_0163 - 18773962-18774297                                         28   6.3  

>02_04_0583 + 24078766-24079800,24080585-24081643
          Length = 697

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 87  ERYQAILYPLLGSTEIVPAGTGVMKISVSYDTTLKD 194
           E Y  ++YPLL  + IVP    ++    S+  T++D
Sbjct: 327 ELYLKVIYPLLEGSTIVPYVAEILLADESFGATIRD 362


>01_05_0163 - 18773962-18774297
          Length = 111

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 318 RLMHASGSASMHRPTP 271
           RL HA+G+AS HRP P
Sbjct: 20  RLNHAAGTASSHRPDP 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,412,629
Number of Sequences: 37544
Number of extensions: 430385
Number of successful extensions: 987
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)