Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120139.Seq
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 30 2.1
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33) 29 2.8
SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008) 29 3.7
SB_30752| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_28928| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_21268| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=3.7) 29 4.9
SB_9042| Best HMM Match : TNFR_c6 (HMM E-Value=7.8) 29 4.9
SB_441| Best HMM Match : zf-C2H2 (HMM E-Value=5.5) 28 6.4
SB_8045| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_56216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 701
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 217 KIENGNRISFNVVSYDTEIFMTPVPAGTISVEP 119
+IE NRI+ NV SYD E P+ G+I + P
Sbjct: 320 RIEKQNRININVFSYDNE-KPYPIYKGSIHIRP 351
>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 238 KVALLGVMLLSRRRTVHTCRSRCVHQATRWI 330
K+ G L SR T HT R+RC+H T ++
Sbjct: 248 KIKWFGSWLRSRPSTRHTVRARCLHPQTLYM 278
>SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33)
Length = 766
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 542 SICCPWVMAPVESFLLCFVRDGRPEKSRAILTLQARLRVDI 420
++ CPW + + ++CF RD R +K+ A + +L+VD+
Sbjct: 698 AVTCPWPLMEFQKRMVCFFRD-RRKKTDAFIA--DKLKVDV 735
>SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)
Length = 832
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 260 CFFPGVGRCILADPDACIRRHG 325
C VG+CI+A+ D C+ HG
Sbjct: 65 CMIAHVGQCIIANGDQCVIAHG 86
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 260 CFFPGVGRCILADPDACIRRHGG 328
C VG+CI+A+ C+ HGG
Sbjct: 108 CMIAHVGQCIIANGGQCVIAHGG 130
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 260 CFFPGVGRCILADPDACIRRHGG 328
C VG+CI+A+ C+ HGG
Sbjct: 140 CMIAHVGQCIIANGGQCVIAHGG 162
>SB_30752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 54 PHPRRKTRCGLCGPRNIC 1
PH RRKTRC C +IC
Sbjct: 516 PHNRRKTRCRECNGGSIC 533
>SB_28928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 852
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -1
Query: 542 SICCPWVMAPVESFLLCFVRDGRPEKSRAILTLQARLRVDI 420
++ CPW + + ++CF RD + +K+ A + +L+VD+
Sbjct: 367 AVTCPWPLMDFQKRMVCFFRD-KQKKTDAFIA--DKLKVDV 404
>SB_21268| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=3.7)
Length = 185
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 54 PHPRRKTRCGLCGPRNIC 1
PH RRKTRC C +IC
Sbjct: 41 PHNRRKTRCRECNGGSIC 58
>SB_9042| Best HMM Match : TNFR_c6 (HMM E-Value=7.8)
Length = 125
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 54 PHPRRKTRCGLCGPRNIC 1
PH RRKTRC C +IC
Sbjct: 47 PHNRRKTRCRECNGGSIC 64
>SB_441| Best HMM Match : zf-C2H2 (HMM E-Value=5.5)
Length = 336
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2
Query: 217 KIENGNRISFNVVSYDTE 164
KIE NRI+ NV SYD+E
Sbjct: 214 KIEKQNRININVFSYDSE 231
>SB_8045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 59 SSECQPTQS-RTVSSDFVPVARFN 127
S C P +S RT+SS+FVP+A N
Sbjct: 77 SPHCTPLKSTRTMSSEFVPLAEVN 100
>SB_56216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 202 YHFLFLGYLDLKKVALLGVMLL 267
+HFL +GY LKK+ ++ ++L
Sbjct: 21 FHFLMVGYFGLKKIVIIPFLVL 42
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,066,102
Number of Sequences: 59808
Number of extensions: 519901
Number of successful extensions: 1755
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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