Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120139.Seq
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical pr... 31 0.80
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 31 1.1
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 31 1.1
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 31 1.1
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 31 1.1
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 31 1.1
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 31 1.1
AF039049-2|AAB94252.2| 297|Caenorhabditis elegans Serpentine re... 31 1.1
AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine re... 29 4.3
Z70757-2|CAA94798.1| 611|Caenorhabditis elegans Hypothetical pr... 28 5.7
AY954525-1|AAX34433.1| 611|Caenorhabditis elegans anion transpo... 28 5.7
AY887917-1|AAX34429.1| 611|Caenorhabditis elegans anion transpo... 28 5.7
AF000299-5|AAC47977.1| 335|Caenorhabditis elegans Hypothetical ... 28 7.5
>Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical
protein K01C8.5 protein.
Length = 707
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 71 QPTQSRTVSSDFVPVARFNRNRTSWHGC 154
QP+ R+ SD +PVARFN N W+ C
Sbjct: 43 QPSIRRSSGSDLMPVARFN-NFKRWNSC 69
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 77 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 202
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 603 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 647
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 77 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 202
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 572 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 616
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 77 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 202
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 512 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 556
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 77 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 202
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 512 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 556
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 77 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 202
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 603 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 647
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 77 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 202
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 572 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 616
>AF039049-2|AAB94252.2| 297|Caenorhabditis elegans Serpentine
receptor, class x protein67 protein.
Length = 297
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/48 (18%), Positives = 25/48 (52%)
Frame = +2
Query: 551 PKYFKLTPTTLYNNNMSILNVVEACDFGTHFFKNWVIYLGPRLVWISL 694
P+ + T++ ++ +L ++ +F W+I+LG +W+++
Sbjct: 212 PRDIRFLRQTVFQGSVFLLELITYFFIPQYFQNQWIIFLGTSFIWVAI 259
>AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein60 protein.
Length = 300
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = +2
Query: 578 TLYNNNMSILNVVEACDFGTHFFKNWVIYLGPRLVWISL 694
+++ + +L +V +F W+I+LG +W+S+
Sbjct: 216 SVFQGTVFLLELVTYFFIPQYFHNQWIIFLGTSFMWVSI 254
>Z70757-2|CAA94798.1| 611|Caenorhabditis elegans Hypothetical
protein ZK287.2 protein.
Length = 611
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -2
Query: 361 IGKRFCGPHEKSTVSPDARIGIGKYAPSYAWKEA*RREVLLSLSLNILKIENG 203
+ K+ C P K I I ++ P+Y WK+ +V+ L++ I+ + G
Sbjct: 16 VEKKECSPFRKKL---QKYIPILEWLPNYQWKDHFHGDVIAGLTVGIMHVPQG 65
>AY954525-1|AAX34433.1| 611|Caenorhabditis elegans anion
transporter SULP-8a protein.
Length = 611
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -2
Query: 361 IGKRFCGPHEKSTVSPDARIGIGKYAPSYAWKEA*RREVLLSLSLNILKIENG 203
+ K+ C P K I I ++ P+Y WK+ +V+ L++ I+ + G
Sbjct: 16 VEKKECSPFRKKL---QKYIPILEWLPNYQWKDHFHGDVIAGLTVGIMHVPQG 65
>AY887917-1|AAX34429.1| 611|Caenorhabditis elegans anion
transporter SULP-8b protein.
Length = 611
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -2
Query: 361 IGKRFCGPHEKSTVSPDARIGIGKYAPSYAWKEA*RREVLLSLSLNILKIENG 203
+ K+ C P K I I ++ P+Y WK+ +V+ L++ I+ + G
Sbjct: 16 VEKKECSPFRKKL---QKYIPILEWLPNYQWKDHFHGDVIAGLTVGIMHVPQG 65
>AF000299-5|AAC47977.1| 335|Caenorhabditis elegans Hypothetical
protein E03H12.3 protein.
Length = 335
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 455 ILTLQARLRVDIVTRYSKFLYAYLHDLIYTTNW 357
I +Q++ D V + +KF+ Y D YTT W
Sbjct: 205 IAGMQSKKEFDYVLKTAKFITGYTPDYQYTTVW 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,638,102
Number of Sequences: 27780
Number of extensions: 385504
Number of successful extensions: 873
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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