Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120139.Seq
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +3

Query: 36  FSDADVVFQANANQLSHERYQAILYPLLGSTEIVPAGTGVMKISVSYDTTLKD 194
           F+ A+ V+      +SH +Y+A L+    S       +     + S  TT+ D
Sbjct: 319 FAKANAVYNPIVYGISHPKYRAALFAKFPSLACAAEPSSDAVSTTSGTTTVTD 371


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 443 QARLRVDIVTRYSKFLYAYLHDLIYTTNW*TF 348
           +AR+R   + R S+  + +L  ++  T W  F
Sbjct: 393 KARMRALNIDRVSRVFFPFLFAVLNVTYWIMF 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,181
Number of Sequences: 438
Number of extensions: 5219
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)