Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120139.Seq
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31650.1 68414.m03886 expressed protein contains Pfam profile...    29   2.3  
At1g60060.1 68414.m06766 expressed protein                             29   4.0  
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ...    28   5.2  
At5g49610.1 68418.m06139 F-box family protein contains Pfam PF00...    27   9.2  

>At1g31650.1 68414.m03886 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 576

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 10  SGAAETTPSFPTRMWCFKRMPTNS 81
           S +  TTPS  +R+WC  ++P+++
Sbjct: 551 SNSVNTTPSRSSRLWCLSKVPSDT 574


>At1g60060.1 68414.m06766 expressed protein
          Length = 386

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 286 HTCRSRCVHQATRWIFRV 339
           HT RS C+H+ ++W++ V
Sbjct: 16  HTLRSLCIHENSQWVYAV 33


>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
           XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
          Length = 1020

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 20  QRPHRVFRRGCGVSSECQPTQSRTVSSDFVPVARFNRNR 136
           ++  RV R   G +++    ++ TV  D VPVARF+ +R
Sbjct: 414 RQAERVKRDKAGKATKRMDDEAPTVQPDLVPVARFSGSR 452


>At5g49610.1 68418.m06139 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (gb|AAF30317.1)
          Length = 359

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 587 NNNMSILNVVEACDFGTHFFKNWVIYLGPRLVWI 688
           N     ++V+E C F TH  KN V+++   L W+
Sbjct: 184 NKWRKFVSVLEECSF-THMSKNQVVFVNGMLHWL 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,462,400
Number of Sequences: 28952
Number of extensions: 347446
Number of successful extensions: 821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)