Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120138.Seq
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27448| Best HMM Match : 7tm_1 (HMM E-Value=0.00049)                 32   0.54 
SB_49220| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)                 32   0.54 
SB_34286| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)                 32   0.54 

>SB_27448| Best HMM Match : 7tm_1 (HMM E-Value=0.00049)
          Length = 158

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 558 SLLGRTPLYFNTHWTNTSYRHLTDFFSCRFFFVLFY 451
           S L   P+   + WTNT ++ L    +CR F+ +FY
Sbjct: 19  STLVGCPITTKSFWTNTWFKGLLGEITCRSFYTIFY 54


>SB_49220| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
          Length = 207

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 558 SLLGRTPLYFNTHWTNTSYRHLTDFFSCRFFFVLFY 451
           S L   P+   + WTNT ++ L    +CR F+ +FY
Sbjct: 74  STLVGCPITTKSFWTNTWFKGLLGEITCRSFYTIFY 109


>SB_34286| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
          Length = 207

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 558 SLLGRTPLYFNTHWTNTSYRHLTDFFSCRFFFVLFY 451
           S L   P+   + WTNT ++ L    +CR F+ +FY
Sbjct: 74  STLVGCPITTKSFWTNTWFKGLLGEITCRSFYTIFY 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,415,056
Number of Sequences: 59808
Number of extensions: 254682
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)