Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120138.Seq
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21450.1 68416.m02706 protein kinase family protein contains ...    30   1.8  
At3g46350.1 68416.m05020 leucine-rich repeat protein kinase, put...    29   4.1  

>At3g21450.1 68416.m02706 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 270

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 517 PVCIKIEWCSTQQTSLDK*HSLDKI 591
           PV IK EWCS Q   LD+ H+  K+
Sbjct: 34  PVVIKREWCSPQPRFLDEVHTNKKL 58


>At3g46350.1 68416.m05020 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 871

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -1

Query: 297 IQIKLFNKLRKETIQSRQEARPPAPA--LKYIKSTSLFYLSVRLR 169
           + + LF  LRK+   S  +A PP+P   L+ + STS+   S+ ++
Sbjct: 506 VSLALFFGLRKKKTSSHVKAIPPSPTTPLENVMSTSISETSIEMK 550


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,538,184
Number of Sequences: 28952
Number of extensions: 182866
Number of successful extensions: 385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)