Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120137.Seq
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011...    30   2.2  
02_04_0550 - 23795957-23796154,23796596-23796650,23797324-237973...    29   5.0  

>07_03_1091 +
           23899825-23900649,23900750-23900998,23901104-23901195,
           23901413-23902193
          Length = 648

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
 Frame = +1

Query: 73  VRISLEKLVPACGIRTPGQSH-----RLIRIHRSCYP---ADHDDLMIYNGL 204
           V + +  + PA     P   H     RL    RSCY    ADHDDL++ NGL
Sbjct: 57  VLLQVTNITPALSGANPFSGHHGFYLRLSDSARSCYVSLHADHDDLILTNGL 108


>02_04_0550 -
           23795957-23796154,23796596-23796650,23797324-23797376,
           23797453-23797529,23797613-23797736,23797848-23797964,
           23798439-23798547,23798724-23798829,23799043-23799106,
           23799214-23799333
          Length = 340

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 425 IDNINNLPNYISLFAHDLDW*PHGSNSWLLLFNNC 321
           +D INNLPN I+     LD     SN W    N C
Sbjct: 81  VDYINNLPNAITSVCFRLDDDLQRSNEWRESLNPC 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,749,815
Number of Sequences: 37544
Number of extensions: 315811
Number of successful extensions: 494
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)