Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120137.Seq
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    31   0.84 
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z46828-3|CAA86858.2|  363|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
            protein C06A5.1 protein.
          Length = 1932

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 30   CYSFTVEVIPEHL-LSTYFIGKVGTCLRDSNTGTVSSLDTN 149
            C + +++ I  H  L  YF+  V TCL++     ++SLDT+
Sbjct: 1045 CQTLSIDCIQLHTSLCEYFLQYVDTCLKNHQIKNITSLDTS 1085


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 118 TPGQSHRLIRIHRSCYPADHDDLMIYNGL-MKVVVGWI 228
           T  +  R IR+H  C P   D L +YN   +K  V ++
Sbjct: 708 TSSKGDRRIRVHTMCLPTTGDLLQLYNNFDLKATVSYL 745


>Z46828-3|CAA86858.2|  363|Caenorhabditis elegans Hypothetical
           protein R03D7.5 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 546 SNLTFFYETECSNK*LDCFHLEILTTNMARI 638
           SNL +FY    ++K ++C  L+ L  ++AR+
Sbjct: 81  SNLLYFYSRNANDKVINCLVLDYLPQDLARL 111


>U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical
           protein F56F10.4 protein.
          Length = 958

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 518 LYLCNLLFR--NYAIRTMYLLKIKFDLTFNILHIDNINNLPNYISLFAHD 375
           +Y C  + +  +Y I  +  LKIK  +   IL+  N NN  +++ L A+D
Sbjct: 843 IYNCQPMVKRDSYKITALEGLKIKNGMVARILNKKNSNNFESFVVLVAND 892


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,628,324
Number of Sequences: 27780
Number of extensions: 318030
Number of successful extensions: 683
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)