Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120137.Seq
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   1.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   1.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.9  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 6   AGLISITRCYSFTVEVIPEHLLSTYFIGKVGTCLRDS 116
           +G IS+T+C  F    +   + ST    K   C R+S
Sbjct: 61  SGDISVTKCEGFCNSQVQPSVASTTGFSKECYCCRES 97


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 6   AGLISITRCYSFTVEVIPEHLLSTYFIGKVGTCLRDS 116
           +G IS+T+C  F    +   + ST    K   C R+S
Sbjct: 61  SGDISVTKCEGFCNSQVQPSVASTTGFSKECYCCRES 97


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 600 NNQVTYLNTQFHKKMSNLN*LL*ISIVPI 514
           NN+  Y N  ++KK+   N ++ I  +P+
Sbjct: 101 NNKYNYNNNNYNKKLYYKNYIINIEQIPV 129


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 83  HWKSWYLPAG 112
           HW++ YLPAG
Sbjct: 7   HWEARYLPAG 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,006
Number of Sequences: 438
Number of extensions: 4360
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)