Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120134.Seq
         (787 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    25   0.69 
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    22   4.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   6.4  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   6.4  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -3

Query: 506 SCNSCKL----SYTNESRI*ICSSSVMRVLSKSNTTTCGNPHVKDSLL 375
           +C  CK     +Y N S I  C ++   V++K N T C    ++  LL
Sbjct: 21  TCEGCKSFFGRTYNNISSISECKNNGECVINKKNRTACKACRLRKCLL 68


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 591 FDIIISEGSTVREERSDLVQNSHNAIVDYNLKKRFI 698
           F II     T+ +E S +  +  N     N+KKRF+
Sbjct: 132 FIIISKHWVTIMKEWSFMEMSMRNYGSSINMKKRFV 167


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 445 EEEQIQIRDSFVYDSLQELHERVAF*SCGRMAV 543
           + E   IRD     SLQ  +E+V F + G  A+
Sbjct: 598 DTEDHDIRDEIEMFSLQIANEQVEFNAAGFFAI 630


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 445 EEEQIQIRDSFVYDSLQELHERVAF*SCGRMAV 543
           + E   IRD     SLQ  +E+V F + G  A+
Sbjct: 323 DTEDHDIRDEIEMFSLQIANEQVEFNAAGFFAI 355


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,458
Number of Sequences: 336
Number of extensions: 4215
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)