Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120134.Seq
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    27   4.0  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    27   4.0  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   5.3  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   7.0  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    26   7.0  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    25   9.3  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   9.3  

>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = -2

Query: 594 QNSLPNR-RLASSV--LHDLYCHTTTRLKRNPFVQFLQAVIHKRISNLNLLLFGYESAVQ 424
           Q S+  R   ASS+  +H+       R +   F  +     +  I N    L+  E AVQ
Sbjct: 330 QRSMSTRTEFASSMATMHEPRARREKRFRGQGFQGYFAGEKYSAIPNAVAGLYDAEDAVQ 389

Query: 423 IEHDHVRKSPRQRFAFERDHFVV 355
            E +   +  +QR   ER+  ++
Sbjct: 390 TERERKERYKKQRAQAEREREIL 412


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 220 SARRQHVRHQAHIKRAFK-TPVLGHMCVLSNKPPMYSFLKEWFLLPHYKVVSLKSES 387
           +ARR+  R Q   +RA++         +L N  P+ + L+E   LP Y   SLK  S
Sbjct: 112 TARRRFQRKQFKAQRAYRENRARERQLLLENGKPIPASLEEDAELPEYLTKSLKDFS 168


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 15  RFKANGSVCALTTPSLNDMFSF*ASTQTSNTL--ALKSINFLN 137
           R K N ++  + TP  +D+     S+ T+NTL   ++S NF N
Sbjct: 286 RKKENVNLNLVKTPKYDDLTKMNLSSSTANTLIKGIQSYNFQN 328


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 227 ADNMCDIRHILNAHSKRQCWATCVC 301
           A+ +C +   +   SKR CW TC C
Sbjct: 163 AEVVCQLIQDMKGWSKR-CWITCTC 186


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 417 HDHVRKSPRQRFAFERDHFVVWQQKPFFKK 328
           H HVR+ P      E D F  W  + +++K
Sbjct: 267 HIHVRRFPISEIPTEEDQFTDWLYQRWYEK 296


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +2

Query: 38  LRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 196
           + L D  +   ++ + +Y  + ++     K  + +  +F  DP+L + IEN Y
Sbjct: 352 IHLGDRDVPNALMFIDKYRQVPHILAPLVKVLQQL--EFLRDPYLVQYIENEY 402


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 501 ARKGCVLVLWSYGSRDHV 554
           A+KG   +LW YG  D++
Sbjct: 225 AKKGYAQILWLYGDEDYI 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,405,594
Number of Sequences: 5004
Number of extensions: 73668
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)