Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120134.Seq
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    31   0.79 
09_01_0150 - 2244757-2245303,2252925-2253277                           29   4.2  
01_07_0229 + 42161770-42164562                                         29   4.2  
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406...    28   7.3  
03_01_0222 - 1756769-1756801,1756889-1756917,1756975-1757859,175...    28   7.3  
04_04_1258 + 32165918-32166041,32167218-32167384,32167569-321677...    28   9.7  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +3

Query: 489 LAGIARKGCVLVLWSYGSRDHVAHSMRDADLEGYFDIIISEGSTVREERSDLVQNSHNAI 668
           L G+   G  ++LW   +     HS      E YF ++I  G  V + + ++++ +H+  
Sbjct: 149 LGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQ-EIIERAHHGD 207

Query: 669 VDY 677
           +DY
Sbjct: 208 MDY 210


>09_01_0150 - 2244757-2245303,2252925-2253277
          Length = 299

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 298 VLSNKPPMYSFLKEWFLLP 354
           V  + PP Y+FLKE FLLP
Sbjct: 4   VQRSTPPFYNFLKEGFLLP 22


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 35  CLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKI 181
           CL+LN  +IK   + + +   LKYL      F E + +     P+L K+
Sbjct: 556 CLKLNQTLIKSLPVAIGQLTKLKYLNLSYMDFLEKIPYGVI--PNLSKL 602


>11_01_0518 +
           4057428-4057538,4059609-4059801,4059921-4060025,
           4060259-4060347,4060424-4060576,4060754-4060888,
           4061241-4061407,4062129-4062223,4062367-4062740,
           4062903-4063176,4063806-4063822
          Length = 570

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = -2

Query: 552 HDLYCHTTTRLKRNPFVQFLQAVIHKRISNLNLLLFGYESAVQIEHDHVRKSPRQRFAFE 373
           H LY H    +K N        +IH  ++  +  L   E+  +++  +  K  +   AF 
Sbjct: 150 HYLYTHKNIVVKYNG-----NRIIHVNLTQESPKLL--EAGKKLDMTYSVKWVQTNVAFA 202

Query: 372 RDHFVVWQQKPFFKKRIHW 316
           R  F V+   PFF+ +IHW
Sbjct: 203 R-RFEVYLDYPFFEHQIHW 220


>03_01_0222 -
           1756769-1756801,1756889-1756917,1756975-1757859,
           1758244-1759273,1759354-1759401,1759626-1760480
          Length = 959

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 17  LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFE 118
           LQ  W   RL + I+KR  +    + DLKYL  E
Sbjct: 860 LQPSWGFQRLKEEIVKRFGISQDTHVDLKYLDDE 893


>04_04_1258 +
           32165918-32166041,32167218-32167384,32167569-32167769,
           32168472-32168631,32168729-32168942,32169160-32169307
          Length = 337

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 68  HVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIF 217
           HVL    ++D++YL  EK   + Y + +   +   CK+ E N    + +F
Sbjct: 143 HVLDEDSWSDVEYLTKEKPPAWAYSVSKVLMEKAACKLAEENNISLITVF 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,406,305
Number of Sequences: 37544
Number of extensions: 445580
Number of successful extensions: 999
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)