Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120134.Seq
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical pr...    31   0.93 
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81481-8|CAB63438.2|  343|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical...    28   8.7  
AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical...    28   8.7  
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    28   8.7  

>U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical
           protein F47G3.1 protein.
          Length = 886

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 277 PVLGHMCVLSNKPPMYSFLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDSTLITEEEQ 456
           P+ GH+ ++  K      + +   +P Y  V  + + +TW F        DST +T+  +
Sbjct: 155 PIEGHVHIIPIKNNAVRLVPDLKYMPKYDYVEPEKKIMTWAFVDSCTALNDSTKLTDYSE 214

Query: 457 IQI--RDSFVY 483
           + +  R +FV+
Sbjct: 215 VGVDSRATFVF 225


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 230 DNMCDIRHILNAHSKRQCWATCVC 301
           DN CD+  I    +K QC++ CVC
Sbjct: 690 DNQCDLASISMIANKDQCFSGCVC 713


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 230 DNMCDIRHILNAHSKRQCWATCVC 301
           DN CD+  I    +K QC++ CVC
Sbjct: 755 DNQCDLASISMIANKDQCFSGCVC 778


>Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical
           protein ZK262.11 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 253 HIKRAFKTPV--LGHMCVLSNKPPMYSFLKEWFLLPHYKVVSLKSESLTWGFPHVV 414
           HI     TPV  LG  C++   P   + +K + L  H  V++L       G P+V+
Sbjct: 23  HIASVIITPVHLLGLYCIIYKTPLQMAAVKWYLLQMHVSVMALDYSVTVVGIPYVL 78


>Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical
           protein C43D7.6 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 253 HIKRAFKTPV--LGHMCVLSNKPPMYSFLKEWFLLPHYKVVSLKSESLTWGFPHVV 414
           HI     TPV  LG  C++   P   + +K + L  H  V++L       G P+V+
Sbjct: 23  HIASVIITPVHLLGLYCIIYKTPLQMAAVKWYLLQMHVSVMALDYSVTVVGIPYVL 78


>Z81481-8|CAB63438.2|  343|Caenorhabditis elegans Hypothetical
           protein C38D9.9 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/80 (28%), Positives = 33/80 (41%)
 Frame = -3

Query: 602 NDIKIAFQIGVSHRVCYMISTAIRPQD*NATLSCNSCKLSYTNESRI*ICSSSVMRVLSK 423
           +D  +  +  V HRV  M    +   D    L  + C+L + +  R    SS  +  L  
Sbjct: 113 DDCSVCLEDDVIHRVVGMTHLEVALSDMTLFLRNSKCRLDWLSVPRAFNQSSETITRLFS 172

Query: 422 SNTTTCGNPHVKDSLLRETT 363
              T   N HVK  +LRE T
Sbjct: 173 DQLT---NLHVKKLILREFT 189


>AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical
           protein Y105E8A.24b protein.
          Length = 1127

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 567 RDADLEGYFDIIISEGSTVREERSDLVQNSHNA 665
           RDADL  YFD   ++ + V E+ SDL ++S N+
Sbjct: 836 RDADLWSYFD-EKADAADVLEKSSDLSEDSDNS 867


>AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical
           protein Y105E8A.24a protein.
          Length = 1161

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 567 RDADLEGYFDIIISEGSTVREERSDLVQNSHNA 665
           RDADL  YFD   ++ + V E+ SDL ++S N+
Sbjct: 836 RDADLWSYFD-EKADAADVLEKSSDLSEDSDNS 867


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 268 FKTPV--LGHMCVLSNKPPMYSFLKEWFLLPH 357
           F TP+  L H CVL+  P  +  LK W +  H
Sbjct: 26  FVTPIYPLAHYCVLTKSPKSFGILK-WIIYVH 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,069,104
Number of Sequences: 27780
Number of extensions: 424904
Number of successful extensions: 1121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)