Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120134.Seq
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25550.1 68418.m03040 leucine-rich repeat family protein / ex...    32   0.38 
At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    30   1.5  
At4g38360.1 68417.m05423 expressed protein contains Pfam profile...    30   1.5  
At5g59020.1 68418.m07393 expressed protein                             29   2.6  
At1g04570.1 68414.m00450 integral membrane transporter family pr...    29   4.6  
At5g18560.1 68418.m02194 AP2 domain-containing transcription fac...    28   6.1  
At4g16170.1 68417.m02455 expressed protein                             28   6.1  
At5g47920.1 68418.m05919 expressed protein similar to unknown pr...    28   8.1  

>At5g25550.1 68418.m03040 leucine-rich repeat family protein /
           extensin family protein similar to leucine-rich
           repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana];
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 433

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 116 EKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIFKAPAD 232
           EK + F Y    F  +P  C+ +E NYNY M  FK   D
Sbjct: 314 EKLRDFRYGSNYFTGEPATCRYLE-NYNYTMNCFKDVRD 351


>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +1

Query: 259 KRAFKTPVLGHMC---VLSNKPPMYSFLKEWFLLP-HYKVV 369
           +++FKTP+L H     ++ +  PM  FLK W L P  Y+VV
Sbjct: 120 RKSFKTPLLDHKDEKGIIKHPFPMNLFLKPWRLSPWFYQVV 160


>At4g38360.1 68417.m05423 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 304

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +1

Query: 259 KRAFKTPVLGHMC---VLSNKPPMYSFLKEWFLLP-HYKVV 369
           +++FKTP+L H     ++ +  PM  FLK W L P  Y+VV
Sbjct: 120 RKSFKTPLLDHKDEKGIIKHPFPMNLFLKPWRLSPWFYQVV 160


>At5g59020.1 68418.m07393 expressed protein
          Length = 780

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 375 QKRIFDVGISARGRVRFGQHSHNRRGANSNSRFVCV*Q 488
           Q+++  VG+   GR+   QHSHNR   +  SRF  V Q
Sbjct: 33  QEKLLSVGVLDWGRLEKWQHSHNR--VSMKSRFPMVSQ 68


>At1g04570.1 68414.m00450 integral membrane transporter family
           protein contains 8 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to hypothetical
           protein GB:AAD38263
          Length = 542

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = +1

Query: 280 VLGHMC---VLSNKPPMYSFLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDSTLITEE 450
           VLG++    +L   PP  SFL    LL    VVSL S+  ++G P +   +  S L + +
Sbjct: 232 VLGNLLGGYLLLTTPPKISFLVFSALLSLQLVVSLSSKEESFGLPRIA--ETSSVLESVK 289

Query: 451 EQI-QIRDSFVYDSLQE 498
           +QI  ++++   D + +
Sbjct: 290 KQISNLKEAIQADEISQ 306


>At5g18560.1 68418.m02194 AP2 domain-containing transcription
           factor, putative AP2/EREBP-like transcription factor
           LEAFY PETIOLE, Arabidopsis thaliana, EMBL:AF216581
          Length = 348

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 651 NSHNAIVD-YNLKKRFIEN---KFVFDIHNHRSDNNIPKSPK 764
           N H+ IV  YN  + F+ N   +FV D H H  + + P+ PK
Sbjct: 125 NLHSLIVSPYNNNQSFLPNSSPQFVIDHHPHYQNYHQPQQPK 166


>At4g16170.1 68417.m02455 expressed protein
          Length = 429

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 376 KSESLTWGFPHVVVFDLDSTLITEEEQIQIRDSFVYD-SLQELH 504
           K+ +L   FPH +V  L+  L T EEQ+    S +YD  L + H
Sbjct: 314 KTTTLPEPFPHELVERLEKYLDTVEEQLVDLSSLLYDHKLYDAH 357


>At5g47920.1 68418.m05919 expressed protein similar to unknown
           protein (emb|CAB67623.1)
          Length = 187

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 612 GSTVREERSDLVQNSHNAIVDYNLKKRFIENKFVFDIHNHRSD 740
           G   +++ +D  Q+ + AIV YN K   + +   +D+H   SD
Sbjct: 62  GHADQDDDNDQDQDKNKAIVLYNSKASTMAHHEEYDVHEEESD 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,562,807
Number of Sequences: 28952
Number of extensions: 375231
Number of successful extensions: 852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)