Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120132.Seq
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    31   0.24 
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    27   3.9  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   3.9  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    26   5.1  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.1  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   8.9  

>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 235 RQALSHLNIPYM--LFNNTPDNIFKEFIKTNHTGHEKVEGTRFDQWTKNQSFVGNRMSES 408
           R     LN+P++  L  NT   I+ ++I   H G +    TRF      +++V  R  ES
Sbjct: 115 RMTSKSLNLPFLRTLPPNTLGKIYVDWIDKEHVGPDTRSPTRFVD-DPEEAYVMQRYRES 173

Query: 409 LHWMRGGSNLPQN 447
             +     N+P N
Sbjct: 174 HDFYHAICNMPTN 186


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 226 VVISTAHHIFALNFIKIRLARQKRDG 149
           V + T + IF +N +K+R  RQ  DG
Sbjct: 18  VALDTGYKIFQINPLKLRAQRQFNDG 43


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 143 LSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPISTYHTCYLII 283
           +SPV   +  SN   I    + +  N D  H     +STY +C  II
Sbjct: 281 VSPVELYNEFSNHGHILGVAINQSINEDMTHYAEVAVSTYESCIEII 327


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 2   LKIVIVTSTNDLEGIKICGIHGQKGVFNGGEDLTEWMAEDGTHAQICLSPV-SFLSRQSN 178
           L   I T +ND     + G+  QK  F G    +EW+  D T   IC S   S +S  S+
Sbjct: 249 LSSTISTLSND----SLDGLSSQKNEFTGFNSNSEWIPND-TVDYICNSDASSVVSNLSD 303

Query: 179 FD 184
           F+
Sbjct: 304 FE 305


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 697 FMFTFTLAYFIDVNI*FYNSVGNFILTKIKGDLFDGYDYYFPIDTL 560
           F F++ L  +ID+       V  F+ T ++ + F G D+  P  TL
Sbjct: 59  FQFSYLLYIYIDLTKADQTEVLQFLKTYVEDESFVGDDFVMPKYTL 104


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 94  FAAVKHTFLTVNATYFYSFQI 32
           F+  KH+F+ +  T FYSF +
Sbjct: 180 FSLQKHSFIVIYKTAFYSFYL 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,433
Number of Sequences: 5004
Number of extensions: 70360
Number of successful extensions: 229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)