Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120132.Seq
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       32   0.58 
SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  

>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 640  SVGNFILTKIKGDLFDGYDYYFP 572
            S+  FI+     D+F GYDYYFP
Sbjct: 2126 SLSPFIIVVFLADVFGGYDYYFP 2148


>SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1368

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
 Frame = +2

Query: 101  TEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPISTYHTCYLI 280
            T+  A D  H  I     + +++Q+ +D     +      H   H K     TYHT    
Sbjct: 1254 TQHTASDTKHTTIDTQQTTSVTQQATYDTY---HTANDNKHSTSHTKHLTNDTYHTASDT 1310

Query: 281  IHPTIFSKNL---LKQTTLDTK 337
             H    +K+     K T  DTK
Sbjct: 1311 KHTASDTKHTASDTKHTASDTK 1332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,354,275
Number of Sequences: 59808
Number of extensions: 524987
Number of successful extensions: 1309
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)