Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120132.Seq
         (763 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.    25   1.9  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   5.9  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   5.9  
Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    23   7.8  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   7.8  

>DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.
          Length = 847

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
 Frame = +1

Query: 310 IKTNHTGHEKVEGTRFDQWTKNQSFVGNRMSESLHWMRGGSNLP--QNCGEFNVMSSLLM 483
           ++T +  H+++ G  F  WT  + +   R +  +H    G   P  QN     +++   +
Sbjct: 270 VRTIYDEHQRISGNGFHAWTVYRPYCEGREASFVHNCFEGETHPTTQNKPRPGIVAPTTI 329

Query: 484 CN------NTIMKNYNSCTIAN--MIKLYLCTKTVCQW 573
                     + K Y+ C +AN  + K +L  + V  W
Sbjct: 330 PTVPKKSLAEVGKVYDRCELANDLLHKFHLPKEQVATW 367


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 385 RTIDSLSIDRSEYLRLFRVQCGLF**IL*KY 293
           RT+ +L  DR +YLR +R+    F   L KY
Sbjct: 338 RTLRNLKKDRMKYLRRYRLNRSAFNFRLFKY 368


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 535  IKLYLCTKTVCQWGN 579
            I+LYL T T  QWG+
Sbjct: 1192 IRLYLKTNTYLQWGD 1206


>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 615 KSKVISSTGTIIISPLTHC 559
           +S  +S  G I+ +PL HC
Sbjct: 27  QSACVSHAGAILTAPLIHC 45


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 628  FILTKIKGDLFDGYDYYFPIDTLFSCTDII 539
            FI+  ++ ++F+  DY   I  +  CTD +
Sbjct: 1242 FIIISLRSNMFELSDYLVGIYKVKDCTDSV 1271


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 847,383
Number of Sequences: 2352
Number of extensions: 18163
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)