Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120132.Seq
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016678-6|AAB66149.2|  236|Caenorhabditis elegans Hypothetical ...    31   0.89 
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    31   0.89 
U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    29   3.6  
Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AY008138-1|AAG32091.1|  357|Caenorhabditis elegans heterotrimeri...    29   4.8  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    29   4.8  
AC024877-8|AAF60904.1|  357|Caenorhabditis elegans G protein, al...    29   4.8  
AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cycl...    28   6.3  
U49954-1|AAA93426.1|  388|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AF016678-6|AAB66149.2|  236|Caenorhabditis elegans Hypothetical
           protein K07E8.3 protein.
          Length = 236

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +2

Query: 185 KIERKYVVRGGNHDDPHAKRYPISTYHTCYLIIHPTIFSKNL--LKQTTLDTKKSKVLAS 358
           K+ +   VRGG  D  H KRYP  T H C       IF+ N+  ++ TT+ T     +A+
Sbjct: 66  KLGQPCYVRGGRVDY-HDKRYPNRTGHDC------VIFNNNIAEIQITTVATNFVTPIAT 118

Query: 359 INGQRI 376
           +N  +I
Sbjct: 119 LNAPKI 124


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 86  GGEDLTEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAK 241
           GGE + +   E G H +        LSR  N + IE+ +V+RG      HAK
Sbjct: 344 GGETIKQINQESGAHCE--------LSRDPNTNPIEKTFVIRGSEAQVEHAK 387


>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 482 INKLDITLNSP-QFCGKLDPPRIQCKLSDI--LLPTND*FF 369
           ++K+DI + SP + CGK+   R+ C L D   LL  ++ FF
Sbjct: 170 VDKVDIRVTSPSEICGKIVARRVNCPLFDASGLLEQSETFF 210


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 138 YACRPS-RFCLASLILIKLSANMWCAVEITTTRTPS 242
           + CRPS RFC+ +L ++ ++   +   ++T   TPS
Sbjct: 465 FICRPSVRFCMLNLYVVYIAIAFYGCSQLTPNLTPS 500


>Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical
           protein Y57G11B.7 protein.
          Length = 215

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 9/111 (8%)
 Frame = +1

Query: 208 ARWKSRRPARQALSHLNIPYMLFNNTPD-------NIFKEFIKTNHTGHEKVEGTRFDQW 366
           A ++  R  R  LS +N P+      P+       N F   +  N+T    + G  F  W
Sbjct: 67  ANFEKLREIRGTLSLINSPFNRMPQMPNLVSIKTHNSFPGLVILNNTRLRDMRG--FVDW 124

Query: 367 TKNQSFVGNRMSESL--HWMRGGSNLPQNCGEFNVMSSLLMCNNTIMKNYN 513
            K+    GN     +  +      NLP+    F+   S L+C   +M NYN
Sbjct: 125 NKDVKITGNEFPVFISGNLELDTVNLPKM---FHKPYSPLLCEKRLMPNYN 172


>AY008138-1|AAG32091.1|  357|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 648 FITASVILF*PKSKVISSTGTIIISPLTHCF 556
           F+  S+ILF  K  +      I+ SPLTHCF
Sbjct: 259 FVETSIILFLNKKDLFEEK--IVRSPLTHCF 287


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 465  HVKLAAVLRQVGPAAHPMQTFRHS---VAYERLILCPLIEASTFDF 337
            HVKL  +   +  A H M +FRHS   + Y  L+    I  STF F
Sbjct: 901  HVKLLKMSSLIVCARHRMSSFRHSLLFILYASLLYSVTILMSTFFF 946


>AC024877-8|AAF60904.1|  357|Caenorhabditis elegans G protein, alpha
           subunit protein 16 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 648 FITASVILF*PKSKVISSTGTIIISPLTHCF 556
           F+  S+ILF  K  +      I+ SPLTHCF
Sbjct: 259 FVETSIILFLNKKDLFEEK--IVRSPLTHCF 287


>AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cyclase
           protein 2 protein.
          Length = 1080

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +2

Query: 41  GIKICGIHG-QKGVFN-GGEDLTEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRG 214
           G  +CGI G +K  F+   +D+T        H +    P +    +S  D +   Y +  
Sbjct: 413 GSVLCGIMGLRKWQFDIWSDDVTL-----ANHMESAGVPGAVHITKSTKDMLLGDYCIVD 467

Query: 215 GNHDDPHAKRYPISTYH 265
            N DDPH   Y   TYH
Sbjct: 468 ANTDDPHVVSYGQPTYH 484


>U49954-1|AAA93426.1|  388|Caenorhabditis elegans Hypothetical
           protein Y102E9.2 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 253 LNIPYMLFNNTPDNIFKEFIKTNHTGHEKVEGTRFDQWTKNQSFVGNRMSESLHWMRGGS 432
           L I     N+  DN+FK     N   +EK +  +F+Q  K +     R++E ++   G  
Sbjct: 327 LTITLTSTNDAIDNLFKNVTHNNQQEYEKRKADKFEQIEKKK----RRLNEDINGDDGEG 382

Query: 433 NLPQN 447
             P N
Sbjct: 383 PGPSN 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,203,256
Number of Sequences: 27780
Number of extensions: 402643
Number of successful extensions: 1201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)