Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120131X.Seq
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   3.9  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   5.2  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    24   6.9  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    24   6.9  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    24   9.1  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    24   9.1  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 313  ALRKHLAPCLFECCFMRLLSCS*CPCTIFHC 221
            +L +H  PC+ + CF + L  S     I  C
Sbjct: 1298 SLMQHFLPCILDSCFSKNLRYSMLGIEILKC 1328


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 313 ALRKHLAPCLFECCFMRLLSCS*CP 239
           AL +    CL EC F +LLS    P
Sbjct: 153 ALEESTVSCLLECVFHQLLSAKNLP 177


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 2   KNACQDSLTELAFQNETLRRFIFQQI 79
           K+A Q +    AF+N  LRR +F  I
Sbjct: 371 KSAAQKAKLIAAFENRQLRRLVFSLI 396


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 231 FSIVLPQNVHAPHLVGVQS 175
           F+++L Q  H PHLV V S
Sbjct: 589 FALLLEQGHHGPHLVVVPS 607


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 231 FSIVLPQNVHAPHLVGVQSRRHDYTVRPF 145
           FS+++ +N++ PHLV   +   +  +R F
Sbjct: 426 FSLLMDKNINGPHLVIAPASTMENWLREF 454


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 210 NVHAPHLVGVQSRRHDYTVRPFVFGRV 130
           +VH P L  V+   + Y++   ++GR+
Sbjct: 576 SVHVPELYSVEEHSNVYSLLSNIYGRI 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,509,525
Number of Sequences: 5004
Number of extensions: 26939
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)