Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120131X.Seq
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0433 - 10178497-10178844,10180394-10180444,10181201-101812...    29   0.92 
01_05_0060 + 17742566-17742826,17744132-17744246,17746818-177469...    29   0.92 
03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477     27   3.7  
07_03_1759 + 29285262-29287208                                         27   6.5  
03_03_0103 - 14442293-14442478,14442915-14442961,14443247-14443373     27   6.5  
06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099     26   8.6  
04_01_0044 + 489486-490012,490903-491332                               26   8.6  

>02_02_0433 -
           10178497-10178844,10180394-10180444,10181201-10181263,
           10181427-10181471,10181772-10181816,10183894-10183923,
           10184182-10184289,10186459-10186524,10186595-10186624,
           10187147-10187501,10189323-10189345,10191421-10191447,
           10192131-10192210,10192367-10192550
          Length = 484

 Score = 29.5 bits (63), Expect = 0.92
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +3

Query: 189 QGVVRVHSAAGQWKIVHGHHEQLNRRIKQHSNKQGAKCFRNATNLRLVYHSARRTTTKPP 368
           Q  V    ++  W  +HGHH   N  ++Q ++   + C  + T+L           T P 
Sbjct: 164 QLAVAARPSSSPWGGIHGHHPHHN-ALQQQASSPRSSCITSTTSLGSNGVLEFSNNTSPR 222

Query: 369 PAW 377
            AW
Sbjct: 223 EAW 225


>01_05_0060 +
           17742566-17742826,17744132-17744246,17746818-17746993,
           17747323-17747418,17747504-17747782
          Length = 308

 Score = 29.5 bits (63), Expect = 0.92
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 371 GRRFCSRTPRAVIHEP*IGCVAK-TLGALFVRMLFYASVKL 252
           G+RFC    R +IH+P  G   K T   L +R + Y  +K+
Sbjct: 162 GKRFCMPNARIMIHQPSGGAGGKVTEMGLQIREMMYEKIKI 202


>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
          Length = 668

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 294 AKCFRNATNLRLVYHSARRTTTKPPPAW 377
           A C R+  +L+L+Y +A R    P P W
Sbjct: 356 ADCLRDLDHLKLLYDAALRDGKLPGPRW 383


>07_03_1759 + 29285262-29287208
          Length = 648

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 300 CFRNATNLRLVYHSARRTTTKPPPAW 377
           C R+  +L+L+Y +A R    P P W
Sbjct: 393 CLRDLEHLKLLYDAALRDGKLPGPTW 418


>03_03_0103 - 14442293-14442478,14442915-14442961,14443247-14443373
          Length = 119

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = +2

Query: 167 WRRLCTPTRCGACTFCG-RTMENCTRASRAT*QTHKTAFEQTRRQVFSQ 310
           W   C PT  G  T CG RT E  +R S        T F+       SQ
Sbjct: 8   WTTTCRPTAGGRATPCGRRTREGGSRRSLRMMGDRGTGFKVPAGDALSQ 56


>06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099
          Length = 575

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 239 VYNFPLSCRRMYTHHTLLVY 180
           +Y+ P+SCR ++ HH L ++
Sbjct: 337 LYSSPISCRDVHVHHLLHLF 356


>04_01_0044 + 489486-490012,490903-491332
          Length = 318

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 176 LCTPTRCGACTFCGRTMENCTRASRAT*QTHKTAFEQTRRQVFSQRNQFTARV 334
           LC+PT  G C  CG  + N +  S  T +    A    RR    +  + TA+V
Sbjct: 266 LCSPTCKGLCVGCGENL-NTSSCSCNTEKQQAKAKNVQRRGPLKRPVETTAKV 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,265,894
Number of Sequences: 37544
Number of extensions: 185494
Number of successful extensions: 523
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)