Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120131X.Seq
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)             29   1.3  
SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)                    28   2.9  
SB_51616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)                28   2.9  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           27   3.8  
SB_1458| Best HMM Match : PAN (HMM E-Value=0.0066)                     27   3.8  
SB_47664| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)              27   5.1  
SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               27   5.1  
SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)               27   6.7  
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)                27   6.7  
SB_53377| Best HMM Match : VRP1 (HMM E-Value=3.4)                      26   8.8  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     26   8.8  
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_20535| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68)                  26   8.8  
SB_37929| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
          Length = 1215

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 292 PCLFE--CCFMRLLSCS*CPCTIFHCPAAECTRTTPCW 185
           PCL +  C  M L++   CP T  +CPA   T+ TPCW
Sbjct: 841 PCLEKNYCDRMGLINPIPCP-TGHYCPAGS-TQPTPCW 876


>SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)
          Length = 608

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +3

Query: 201 RVHSAAGQWKIVHGHHEQLNRRIKQHSNKQGAKCFRNATNLRLVYHSARRTTT 359
           R H  AG     H  H Q  RR   H++    K  R  T+  +  H ARR  T
Sbjct: 297 REHKKAGTHTRRH-MHAQKARRAVTHADMHARKARRAVTHADMHAHKARRAVT 348


>SB_51616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 171 DDSVHQQGVVRVHSAAGQWKIVHGHHEQLNRRIKQHSNKQGAKC 302
           D SVH +       A  +WK V   HE+  +R+++   K+  +C
Sbjct: 15  DHSVHSEMAFDYALATEEWKHVVEEHEEKIKRLQEKYKKRCKEC 58


>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
          Length = 622

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 253 CS*CPCTIFHCPAAECTRTT 194
           CS CP  +F CP+ EC  TT
Sbjct: 217 CS-CPSNMFLCPSGECIPTT 235


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 274 CFMRLLSCS*CPCTIFHCPAAECT--RTTPC 188
           C++ L  C  C C++  C   +CT  +  PC
Sbjct: 220 CYVNLCCCVTCRCSVCTCCPCDCTCLQCAPC 250


>SB_1458| Best HMM Match : PAN (HMM E-Value=0.0066)
          Length = 403

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 316 VALRKHLAPCL-FECCFMRLLSCS*CPCTIFHCP 218
           +  RK    C+  E  F+R  SCS C   IFH P
Sbjct: 309 IMTRKRWGECVRMESIFIRNQSCSNCTVGIFHWP 342


>SB_47664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 321 NWLRCENTWRLVCSNAVLCVC*VARDARVQFSIVLPQNVHA 199
           +W+RC    RL+ S   L     AR AR    ++ P+ +HA
Sbjct: 26  SWVRCTLISRLLVSLVGLRCLFSARAARSSSEVIYPERLHA 66


>SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)
          Length = 691

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 339 CDTRAVNWLRCENTWRLVCSNAV 271
           CD  A  W RCE  ++L+C   +
Sbjct: 102 CDANAHAWGRCEECYQLMCEACI 124


>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 136 AKHERTHCIIMATTLYTNKVWCVYILRQDNGKLYTGITSNLT 261
           A H    C ++ T  +   V CV IL    G LYTG  S L+
Sbjct: 237 ASHRLLFCSLIGTGYHLALVACVVILFTIMGDLYTGRGSILS 278


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 237 HGHHEQLNRRIKQHSNKQGAK 299
           H H  Q NR+IK+H  K  A+
Sbjct: 934 HHHRRQHNRKIKKHRRKHSAR 954


>SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 926

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -3

Query: 244 CPCTIFHCPAAE-CTRTTPCW 185
           C C +  CP  + CTRT  CW
Sbjct: 71  CTCKLMPCPCGDSCTRTV-CW 90


>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
          Length = 367

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 281 RMLFYASVK-LLVMPVYNFPLSCRRMYTHHTLL 186
           R+LF  S + +L+ P Y   ++C R +T  TLL
Sbjct: 15  RILFAISAQSILMQPTYTGSINCARYFTDITLL 47


>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
          Length = 324

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 220 DNGKLYTGITSNLTDA*NSIRTNKAPSVFATQPIYGSCITARG 348
           D GK+   +  +L DA      N+A  ++ + P Y   ITA+G
Sbjct: 57  DIGKIIGQMWRDLDDAEKQQEYNEAVKLYHSSPAYQDWITAKG 99


>SB_53377| Best HMM Match : VRP1 (HMM E-Value=3.4)
          Length = 335

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 244 CPCTIFHCPAAECTRTTP 191
           C C ++HCP   C    P
Sbjct: 297 CDCRLYHCPLCTCLPNKP 314


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 227 ENCTRASRAT*QTHKTAFEQTRRQVFSQRNQFTARVSQREAYDYKTAAR 373
           +N  R++ A  Q   T +EQ RR++ +   + T  V+QR   D  + AR
Sbjct: 767 DNLARSAAAAYQNGTTFYEQQRRELAAAFTR-TPAVNQRATDDVTSPAR 814


>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = -3

Query: 295 APCLFECCFMRLLSCS*CPCTIFHCPAAECTRTTPC 188
           A C    C      CS C C    CP  +C    PC
Sbjct: 218 ADCYVNLCCCVTCRCSVCTCCPCDCPCLQC---APC 250


>SB_20535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 327 AVNWLRCENTWRLVCSNAVL 268
           A+ WLRC   WR + +N+ +
Sbjct: 3   AIEWLRCFVVWREIVTNSAI 22



 Score = 26.2 bits (55), Expect = 8.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 327 AVNWLRCENTWRLVCSNAVL 268
           A+ WLRC   WR + +N+ +
Sbjct: 39  AIEWLRCFIVWREIVTNSAI 58


>SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68)
          Length = 807

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 244 CPCTIFHCPAAECTRTTP 191
           C C ++HCP   C    P
Sbjct: 765 CDCRLYHCPLCTCLPNKP 782


>SB_37929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 188 TRCGACTFCG-RTMENCTRASRAT*QTHKTAFEQTRRQVFSQRNQFTA 328
           T C + T     T+ NC  A+RAT  T    +  TR  V +  N ++A
Sbjct: 65  TNCYSATHATVSTITNCYSATRATASTITNCYSATRATVSTITNCYSA 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,084,848
Number of Sequences: 59808
Number of extensions: 230451
Number of successful extensions: 779
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)