Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120131X.Seq
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   2.1  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   2.8  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   2.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   4.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +2

Query: 176 LCTPTRCGACTFCGRTMENCTRASRAT*QTH 268
           L  P  C  C  CG+T+       R   Q H
Sbjct: 365 LLPPGVCYTCDVCGKTLSTKLTLKRHKEQQH 395


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 174 DSVHQQGVVRVHSAAGQWKIVHGHHEQLNRR 266
           D V   G   V ++A     VHGH E L RR
Sbjct: 27  DRVRGNGNAIVSNSASN--SVHGHREGLGRR 55


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 174 DSVHQQGVVRVHSAAGQWKIVHGHHEQLNRR 266
           D V   G   V ++A     VHGH E L RR
Sbjct: 28  DRVRGNGNAIVSNSASN--SVHGHREGLGRR 56


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 42  WNANSVKLSWQAFL 1
           W   SV + W AFL
Sbjct: 390 WRHTSVLIGWSAFL 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,407
Number of Sequences: 438
Number of extensions: 2028
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)