Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120131X.Seq
(378 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13870.2 68416.m01752 root hair defective 3 (RHD3) identical ... 27 3.1
At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical ... 27 3.1
At2g30480.2 68415.m03713 expressed protein 27 3.1
At2g30480.1 68415.m03712 expressed protein 27 3.1
At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to ... 27 4.1
At1g19490.1 68414.m02428 bZIP transcription factor family protei... 27 4.1
At3g47340.3 68416.m05147 asparagine synthetase 1 [glutamine-hydr... 27 5.5
At3g47340.2 68416.m05146 asparagine synthetase 1 [glutamine-hydr... 27 5.5
At3g47340.1 68416.m05145 asparagine synthetase 1 [glutamine-hydr... 27 5.5
At2g17470.1 68415.m02017 expressed protein contains Pfam profile... 27 5.5
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 26 7.2
At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) ... 26 9.6
At2g07728.1 68415.m00978 expressed protein ; expression supporte... 26 9.6
>At3g13870.2 68416.m01752 root hair defective 3 (RHD3) identical to
root hair defective 3 (RHD3) GI:1839188 from
[Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
Length = 738
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 164 SWRRLCTPTRCGACTFCGRTMENCTRASRAT*QTHKTAFEQTRRQVFSQRNQFTARVSQ 340
+WR L + G + GR + + +AS + T T FE++ R S+R Q ++ Q
Sbjct: 241 NWRELEEAVQSGPVSGFGRKLSSILQASLSEYDTEATYFEESVRS--SKRQQLQEKLLQ 297
>At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical to
root hair defective 3 (RHD3) GI:1839188 from
[Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
Length = 802
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 164 SWRRLCTPTRCGACTFCGRTMENCTRASRAT*QTHKTAFEQTRRQVFSQRNQFTARVSQ 340
+WR L + G + GR + + +AS + T T FE++ R S+R Q ++ Q
Sbjct: 305 NWRELEEAVQSGPVSGFGRKLSSILQASLSEYDTEATYFEESVRS--SKRQQLQEKLLQ 361
>At2g30480.2 68415.m03713 expressed protein
Length = 566
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 218 RTMENCTRASRAT*QTHKTAFEQTRRQVFSQRNQFT 325
R+ E+C+ ++ T +TH + FE RQ + N+F+
Sbjct: 341 RSEESCSSSAVWTNETHNSQFETNTRQRKRETNKFS 376
>At2g30480.1 68415.m03712 expressed protein
Length = 621
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 218 RTMENCTRASRAT*QTHKTAFEQTRRQVFSQRNQFT 325
R+ E+C+ ++ T +TH + FE RQ + N+F+
Sbjct: 341 RSEESCSSSAVWTNETHNSQFETNTRQRKRETNKFS 376
>At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to
SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1)
(NR1){Arabidopsis thaliana}
Length = 917
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 198 VRVHSAAGQ-WKIVHGHHEQLNRRIKQH 278
VR H+ A W IVHGH R +K H
Sbjct: 553 VRKHNTADSAWIIVHGHIYDCTRFLKDH 580
>At1g19490.1 68414.m02428 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription factor
Length = 471
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 182 TPTRCGACTFCGRTMENCTRASRAT*QTHK-TAFEQTRRQVFSQRNQFTARVSQREA 349
T RC CGR+ +N + A R + + A ++ RQ +R +S++ A
Sbjct: 135 TLIRCSRSNGCGRSRQNLSEAEREERRIRRILANRESARQTIRRRQAMCEELSKKAA 191
>At3g47340.3 68416.m05147 asparagine synthetase 1
[glutamine-hydrolyzing] / glutamine-dependent asparagine
synthetase 1 (ASN1) identical to SP|P49078 Asparagine
synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
(Glutamine- dependent asparagine synthetase)
{Arabidopsis thaliana}
Length = 456
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Frame = +3
Query: 156 LYNHGDDSVHQQGVVRVHSAAGQWKI----------VHG---HHEQLNRRIKQHSNKQGA 296
LY +GD+ + Q + + A+G + V+G +HE+L +R+K H + G+
Sbjct: 38 LYQNGDNYLAHQRLAVIDPASGDQPLFNEDKTIVVTVNGEIYNHEELRKRLKNHKFRTGS 97
Query: 297 KC 302
C
Sbjct: 98 DC 99
>At3g47340.2 68416.m05146 asparagine synthetase 1
[glutamine-hydrolyzing] / glutamine-dependent asparagine
synthetase 1 (ASN1) identical to SP|P49078 Asparagine
synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
(Glutamine- dependent asparagine synthetase)
{Arabidopsis thaliana}
Length = 512
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Frame = +3
Query: 156 LYNHGDDSVHQQGVVRVHSAAGQWKI----------VHG---HHEQLNRRIKQHSNKQGA 296
LY +GD+ + Q + + A+G + V+G +HE+L +R+K H + G+
Sbjct: 38 LYQNGDNYLAHQRLAVIDPASGDQPLFNEDKTIVVTVNGEIYNHEELRKRLKNHKFRTGS 97
Query: 297 KC 302
C
Sbjct: 98 DC 99
>At3g47340.1 68416.m05145 asparagine synthetase 1
[glutamine-hydrolyzing] / glutamine-dependent asparagine
synthetase 1 (ASN1) identical to SP|P49078 Asparagine
synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
(Glutamine- dependent asparagine synthetase)
{Arabidopsis thaliana}
Length = 584
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Frame = +3
Query: 156 LYNHGDDSVHQQGVVRVHSAAGQWKI----------VHG---HHEQLNRRIKQHSNKQGA 296
LY +GD+ + Q + + A+G + V+G +HE+L +R+K H + G+
Sbjct: 38 LYQNGDNYLAHQRLAVIDPASGDQPLFNEDKTIVVTVNGEIYNHEELRKRLKNHKFRTGS 97
Query: 297 KC 302
C
Sbjct: 98 DC 99
>At2g17470.1 68415.m02017 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 538
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 246 HEQLNRRIKQHSNKQGAKCFRNATNLRLVYHSARR 350
H+Q R+ N+ CFR TNL + HS RR
Sbjct: 5 HQQSRERLLSQ-NEYSDMCFRKITNLCELGHSDRR 38
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 26.2 bits (55), Expect = 7.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 232 IFHCPAAECTRTTPC 188
+FHCP C TT C
Sbjct: 71 VFHCPVCYCLATTRC 85
>At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) low
similarity to SP|Q56239 DNA mismatch repair protein mutS
{Thermus aquaticus}; contains Pfam profiles PF05190: MutS
family domain IV, PF01624: MutS domain I, PF01541:
Endo/excinuclease amino terminal domain
Length = 1118
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 199 CVYILRQDNGKLYTGITSNL 258
CVY++R+ + +LY G T +L
Sbjct: 1026 CVYVMRRPDKRLYIGQTDDL 1045
>At2g07728.1 68415.m00978 expressed protein ; expression supported
by MPSS
Length = 286
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 269 YASVKLLVMPVYNFPLS 219
YA VKL+VMP+ +F +S
Sbjct: 221 YAQVKLVVMPISSFSIS 237
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,013,646
Number of Sequences: 28952
Number of extensions: 142628
Number of successful extensions: 413
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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