Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120127.Seq
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DT78 Cluster: Chromosome undetermined scaffold_62, wh...    36   1.2  
UniRef50_UPI0000E224BA Cluster: PREDICTED: hypothetical protein;...    33   5.0  
UniRef50_Q9HVA7 Cluster: Iron (III)-transport system permease Hi...    33   5.0  
UniRef50_A5NPA8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_A4RT32 Cluster: ABC1 family protein-like protein; n=2; ...    33   5.0  
UniRef50_Q7NLR2 Cluster: Glr1059 protein; n=1; Gloeobacter viola...    33   6.6  
UniRef50_A0JV79 Cluster: Peptidoglycan-binding LysM; n=2; Arthro...    33   8.7  
UniRef50_Q9ST79 Cluster: CAA303718.1 protein; n=4; Oryza sativa|...    33   8.7  

>UniRef50_A0DT78 Cluster: Chromosome undetermined scaffold_62, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_62,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1176

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = -1

Query: 382 VIPNQINRCFGLVLED**CHGEYNVCGCVCIWNIPSSVKCKKSLKMVS*WPSCHISP 212
           ++P ++  CF +++    CHGE  + G   ++    + K K+ L+ ++ WP   I+P
Sbjct: 412 MLPLEVKLCFRVLIYS--CHGESQIVGSTSMYLFDQNSKFKQGLQTLNLWPFYDINP 466


>UniRef50_UPI0000E224BA Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 193

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
 Frame = -1

Query: 298 VCIWNIPSSVK-C--KKSLKMVS*WPSCHISPGNFRFKLISRHVLTLQSVFSGLRDLPGM 128
           +C+W +P  +  C  KK         +  ++  NFR  ++  HV+TL+S+       P +
Sbjct: 103 LCVWLLPQDLSPCNIKKDAMRAKAVGTSAVTTPNFRIPIVCLHVITLKSLHVDAGPGPQV 162

Query: 127 SMVPWYSVSPVPNSSHTGFMVPCVMIRSKKP 35
             +     +     S TG+   C + R  KP
Sbjct: 163 QRLRALQDTAWSRHSSTGWKSMCPLNRGSKP 193


>UniRef50_Q9HVA7 Cluster: Iron (III)-transport system permease HitB;
           n=14; Pseudomonas|Rep: Iron (III)-transport system
           permease HitB - Pseudomonas aeruginosa
          Length = 512

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +2

Query: 260 LTFYATGYVPNTHTAADIVLSMASLIFKDKAKAPIDLIWDDSFQASPSEECGFSVVGETP 439
           L +++  Y+P T+    ++L   +L+F    +API +  +   +ASP  E     +G+TP
Sbjct: 368 LVYFSLHYLPATYQTTGLLLVAYALLFMPLTQAPIRVALE---KASPQLEEAARTLGQTP 424

Query: 440 LV 445
           L+
Sbjct: 425 LM 426


>UniRef50_A5NPA8 Cluster: Putative uncharacterized protein; n=1;
           Methylobacterium sp. 4-46|Rep: Putative uncharacterized
           protein - Methylobacterium sp. 4-46
          Length = 271

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 118 PWYSVSPVPNSSHTGFMVPCVMIRSKKPISV 26
           PW+ +  VP   HTGF +P +M+  +KP++V
Sbjct: 79  PWHGLREVPYLVHTGFELP-LMLEGRKPLAV 108


>UniRef50_A4RT32 Cluster: ABC1 family protein-like protein; n=2;
           Ostreococcus|Rep: ABC1 family protein-like protein -
           Ostreococcus lucimarinus CCE9901
          Length = 626

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = +1

Query: 496 ISSYDEEDQIQAALKTLGIKDT---PVDLKDVSGIVFETKED 612
           +S Y+E DQ+ A LKTL ++ T   P  ++ ++ I+F+T+ D
Sbjct: 428 VSLYEESDQLYAILKTLKVEFTINDPKLIRTIASILFDTRMD 469


>UniRef50_Q7NLR2 Cluster: Glr1059 protein; n=1; Gloeobacter
           violaceus|Rep: Glr1059 protein - Gloeobacter violaceus
          Length = 368

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 179 MSGDQFKSEVTW*NMATGPSRNHLQRFLTFYATGYVPNTHTAADI 313
           ++G   ++++ W N  TG S   L   +TF  TGY+P     A +
Sbjct: 300 VAGQDGQTDIVWRNKVTGESAIWLMNGITFNLTGYLPQVVNVASL 344


>UniRef50_A0JV79 Cluster: Peptidoglycan-binding LysM; n=2;
           Arthrobacter|Rep: Peptidoglycan-binding LysM -
           Arthrobacter sp. (strain FB24)
          Length = 399

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = -1

Query: 193 LISRHVLTLQSV-FSGLR-DLPGMSMVPWYSVSPVPNSSHTGFMVPCVMIRS 44
           ++S + LT+ SV F G +  +PG S+ P  SV+P+  SS  GF  P  ++ S
Sbjct: 205 ILSANKLTMTSVIFPGNKLVIPGASIQPAASVTPLVPSSFLGFTYPAAVVSS 256


>UniRef50_Q9ST79 Cluster: CAA303718.1 protein; n=4; Oryza
           sativa|Rep: CAA303718.1 protein - Oryza sativa (Rice)
          Length = 425

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
 Frame = +2

Query: 62  GHHEASMGRIGDRRDRVPRDHGHSREISQARKNRLEC*YMSGDQFKSEVTW*NMATGPSR 241
           G    S GR G  RD +P  HGH R  S    +       SG   +S ++W    T  + 
Sbjct: 196 GQRNRSFGRAGTTRDSLPHGHGHHRRSSSGGSSGSG----SGSHLRS-LSWSVSRTWSAA 250

Query: 242 NHLQRF---LTFYATGYVPNTHTAADIVLSMASLIF 340
             LQ     LT      +  T   A  V +M +++F
Sbjct: 251 RQLQAIGGGLTVPRANDIAATGGLASAVYAMGAVLF 286


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,163,016
Number of Sequences: 1657284
Number of extensions: 16211719
Number of successful extensions: 42055
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 40523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42043
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)