Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120127.Seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    31   0.16 
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    30   0.27 
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    26   5.9  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    25   7.8  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   7.8  

>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 229 SCHISPGNFRFKLISRHVLTLQSVFSGLRDLPGMSMVPWYSVSPVPNSSHTGFMVPCVMI 50
           S H S GN+   ++ RHVL        ++D    +M+ + S   V ++ +T F + CV  
Sbjct: 166 SMHFSTGNYSLPVLIRHVLLYDYYTDDMKDSLWRAMIIYVS-RQVTSNKYTKFHLWCVQK 224

Query: 49  R 47
           R
Sbjct: 225 R 225


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = +2

Query: 233 PSRNHLQRFLTFYATGYVPNTHTAADIVLSMASLIFKDKAKAPIDLIWDDSFQASPSEEC 412
           P+ +    +L+  ++    N+  +  I LS++S I +DK  +P+DL  DD    S  EE 
Sbjct: 557 PAISKQPSYLSISSSSKSINSSPSPSIQLSVSSSISRDKNLSPLDLELDDP-TYSDEEEV 615

Query: 413 GFSVVGETPL 442
            F+  G+  L
Sbjct: 616 LFAPPGDLQL 625


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = -1

Query: 229 SCHISPGNFRFKLISRHVLTLQSVFSGLRDLPGMSMVPWYSVSPVPNSSHTGFMVPCVMI 50
           S HISP +F   + +R++   +S+  GL+  P ++    YS S  P  S   F     + 
Sbjct: 263 SNHISPASFGSGIRTRNIFNPESMSLGLKP-PILNRS--YSASMAPGFSMNTFTATGNLG 319

Query: 49  RSKKPISVK*SLSS 8
           R  K  SV  S+ S
Sbjct: 320 RPTKSPSVPTSVGS 333


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 165 WSVNTCREISLNLKLPGEIWQLGHQETIFNDFLHFTLLGMFQ 290
           W V  CR + L+L+    ++ LGH ++I +  +   +L  FQ
Sbjct: 142 WGV-VCRALGLSLERTCYLFLLGHAKSICSAAVRLDVLTSFQ 182


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 517 DQIQAALKTLGIKDTPV 567
           DQI  +L TLG++D PV
Sbjct: 6   DQISKSLSTLGLQDLPV 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,344
Number of Sequences: 5004
Number of extensions: 69631
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)