Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120127.Seq
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1668 + 35217254-35218531                                         33   0.28 
01_06_0236 - 27751430-27751600,27752029-27752278,27753131-27754050     30   2.0  
10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380     29   4.6  

>04_04_1668 + 35217254-35218531
          Length = 425

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
 Frame = +2

Query: 62  GHHEASMGRIGDRRDRVPRDHGHSREISQARKNRLEC*YMSGDQFKSEVTW*NMATGPSR 241
           G    S GR G  RD +P  HGH R  S    +       SG   +S ++W    T  + 
Sbjct: 196 GQRNRSFGRAGTTRDSLPHGHGHHRRSSSGGSSGSG----SGSHLRS-LSWSVSRTWSAA 250

Query: 242 NHLQRF---LTFYATGYVPNTHTAADIVLSMASLIF 340
             LQ     LT      +  T   A  V +M +++F
Sbjct: 251 RQLQAIGGGLTVPRANDIAATGGLASAVYAMGAVLF 286


>01_06_0236 - 27751430-27751600,27752029-27752278,27753131-27754050
          Length = 446

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -2

Query: 291 FGTYPVA*NVRNR*RWFLDGPVAIFHQVT 205
           FGT+PVA +V  + R  L+GPV   +QVT
Sbjct: 309 FGTWPVAIHVGTKYRVVLEGPVCKGNQVT 337


>10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380
          Length = 411

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 56  DTGHHEASMGRIGDRRDRVPRDHGHSREISQARKNRL 166
           D GH EA+   I   RD +   HG  R++SQ  +  +
Sbjct: 27  DGGHMEAAYDGIHSFRDDIEESHGFLRKLSQLEETTM 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,001,264
Number of Sequences: 37544
Number of extensions: 446486
Number of successful extensions: 1199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)