Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120127.Seq
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_59537| Best HMM Match : Glyco_hydro_35 (HMM E-Value=9.1e-08)        29   4.7  
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         29   4.7  
SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)               28   8.2  

>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 41  LRSYHDTGHHEASMGRIGDRRDRVPRDHGHSR 136
           +R YH T H    + ++ DRR+R P + GH R
Sbjct: 158 VRGYHKT-HERGPIEKMPDRRERSPYERGHER 188


>SB_59537| Best HMM Match : Glyco_hydro_35 (HMM E-Value=9.1e-08)
          Length = 374

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +3

Query: 21  YFTDIGFLDLIMTQGTMKPVWEELGTGETEYQGTMDIPG--RSLKPEKTDWSVNTCREIS 194
           +F    F D ++  GT   +   +G     Y+G + I G  R        W    C    
Sbjct: 259 FFISSLFSDTLLKAGTK--INGSVGHSPGFYRGILHIQGQPRDTFVHPKGWGKGVCLVNG 316

Query: 195 LNLKLPGEIWQLGHQETIF 251
            NL   G  W+LG QET++
Sbjct: 317 KNL---GRYWKLGPQETLY 332


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 227 TGPSRNHLQRFLTFYATGYVPNTHTAADIVLSMASLIFKDKAKAPIDLIWDDSFQASPS- 403
           +GP+ N  Q F+T   T ++   H     VL    ++ ++    P+    DDS   SP  
Sbjct: 200 SGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVV-RELEATPV----DDSSPKSPCI 254

Query: 404 -EECGFSVVGE 433
            EECG    GE
Sbjct: 255 IEECGELAPGE 265


>SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)
          Length = 533

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 134 WNVHGPLVLCLSCPQFFPYWLHGALCHDKI 45
           W  HG +V C +CPQ  P      +C  +I
Sbjct: 92  WVKHGKIVACQACPQCTPGEESSLMCGTRI 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,428,521
Number of Sequences: 59808
Number of extensions: 521533
Number of successful extensions: 1287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)