Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120127.Seq
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025465-11|AAB71024.1|  411|Caenorhabditis elegans Hypothetical...    32   0.44 
AF016422-3|AAG24173.1|  411|Caenorhabditis elegans Hypothetical ...    32   0.44 
AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical ...    30   1.4  
U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U67956-3|AAB07692.1|  138|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z70286-7|CAA94292.3|  431|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF077531-7|AAL27240.1|  418|Caenorhabditis elegans Gex interacti...    28   5.5  
AF077531-6|AAC64616.2|  408|Caenorhabditis elegans Gex interacti...    28   5.5  
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z83112-2|CAB05539.1|  391|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF125964-4|ABA03109.1|  414|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF047655-3|ABD63244.1|  414|Caenorhabditis elegans Hypothetical ...    27   9.6  
AC024831-4|ABD63212.1|  355|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF025465-11|AAB71024.1|  411|Caenorhabditis elegans Hypothetical
           protein K02E7.2 protein.
          Length = 411

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 132 PGRSLKPEKTDWSVNTCREISLNLKLPGEIWQLGHQETIFND 257
           P R  +PE T+  V T R    N K P +  ++GHQ TI +D
Sbjct: 25  PTRKRQPETTEIVVKTRRITRRNAKAPVKEEEIGHQITIVDD 66


>AF016422-3|AAG24173.1|  411|Caenorhabditis elegans Hypothetical
           protein R09E12.5 protein.
          Length = 411

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 132 PGRSLKPEKTDWSVNTCREISLNLKLPGEIWQLGHQETIFND 257
           P R  +PE T+  V T R    N K P +  ++GHQ TI +D
Sbjct: 25  PTRKRQPETTEIVVKTRRITRRNAKAPVKEEEIGHQITIVDD 66


>AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical
           protein Y75B8A.8 protein.
          Length = 715

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 493 RISSYDEEDQIQAALKTLGIKDTPVD--LKDVSGIVFETKEDREQRSRM 633
           RI SYD    ++  L  L  +D P    ++++  +VF+ KEDRE+   M
Sbjct: 385 RIVSYDHLLSLKTPLHRLMTRDCPTFPLMEEIRKVVFKKKEDREKAMLM 433


>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -1

Query: 223 HISPGNFRFKLISRHVLTLQSVFSGLRDLPGMSMVPWYSVSPVPNSSH 80
           H   G ++F+L++RH++ + S +     +  ++   W S S V +  +
Sbjct: 402 HNYDGKYKFELLTRHLMRVMSNWDAQESMSSLNSDSWMSTSVVSSKGN 449


>U67956-3|AAB07692.1|  138|Caenorhabditis elegans Hypothetical
           protein F16F9.3 protein.
          Length = 138

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 308 DIVLSMASLIFKDKAKAPIDLIWDDSFQASPSEECGFSVVGETPLVIGQHPDDDDYTLRE 487
           DI+   +   F+D  K     + D+      +E+ GFS++G    VI  H  D +  L  
Sbjct: 74  DIIRGFSDKGFEDCDKNADKYLVDEEVGCFIAEKMGFSLIGTLEQVIQHHDKDQNGKLDS 133

Query: 488 DE 493
           D+
Sbjct: 134 DD 135


>Z70286-7|CAA94292.3|  431|Caenorhabditis elegans Hypothetical
           protein K08C7.1 protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 93  GTGETEYQGTMDIPGRSLKPEKTDWS 170
           G G+T  QGT D+P R L  + T W+
Sbjct: 208 GKGKTTAQGTPDVPYRQLLLDTTVWA 233


>AF077531-7|AAL27240.1|  418|Caenorhabditis elegans Gex interacting
           protein protein10, isoform b protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 81  WEELGTGETEYQGTMDIPGRSLKPEKTDWSVNTCREISLNLKLPGEIWQ 227
           WE     E+  +GT  + G       TDW  N    +S  L+ P + W+
Sbjct: 313 WENKLISESTGKGTAPLSGHMFTRPDTDWRNNNTSYLSAALRTP-KFWE 360


>AF077531-6|AAC64616.2|  408|Caenorhabditis elegans Gex interacting
           protein protein10, isoform a protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 81  WEELGTGETEYQGTMDIPGRSLKPEKTDWSVNTCREISLNLKLPGEIWQ 227
           WE     E+  +GT  + G       TDW  N    +S  L+ P + W+
Sbjct: 313 WENKLISESTGKGTAPLSGHMFTRPDTDWRNNNTSYLSAALRTP-KFWE 360


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
            protein F40E12.2 protein.
          Length = 1251

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +1

Query: 508  DEEDQIQAALKTLGIKDTPVDLKDVSGIVFETKEDREQRSRMRKLY 645
            +EED+I  ALKT   ++ P D +D+  IV++ ++  +     +K++
Sbjct: 1178 EEEDRIARALKTEPTEEEPTDPEDL--IVYDPRKQYKPMKGKKKVH 1221


>Z83112-2|CAB05539.1|  391|Caenorhabditis elegans Hypothetical
           protein K02B7.2 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 132 PGRSLKPEKTDWSVNTCREISLNLKLPGEIWQLGHQE 242
           P R  +PE T+  V T R    N K P +  ++GHQ+
Sbjct: 61  PTRKRQPETTEIVVKTRRITRRNAKAPVKEEEIGHQK 97


>AF125964-4|ABA03109.1|  414|Caenorhabditis elegans Hypothetical
           protein W03G1.3 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 132 PGRSLKPEKTDWSVNTCREISLNLKLPGEIWQLGHQE 242
           P R  +PE T+  V T R    N K P +  ++GHQ+
Sbjct: 25  PTRKRQPETTEIVVKTRRITRRNAKAPVKEEEIGHQK 61


>AF047655-3|ABD63244.1|  414|Caenorhabditis elegans Hypothetical
           protein C17B7.13 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 132 PGRSLKPEKTDWSVNTCREISLNLKLPGEIWQLGHQE 242
           P R  +PE T+  V T R    N K P +  ++GHQ+
Sbjct: 25  PTRKRQPETTEIVVKTRRITRRNAKAPVKEEEIGHQK 61


>AC024831-4|ABD63212.1|  355|Caenorhabditis elegans Hypothetical
           protein Y55F3C.11 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 132 PGRSLKPEKTDWSVNTCREISLNLKLPGEIWQLGHQE 242
           P R  +PE T+  V T R    N K P +  ++GHQ+
Sbjct: 25  PTRKRQPETTEIVVKTRRITRRNAKAPVKEEEIGHQK 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,157,340
Number of Sequences: 27780
Number of extensions: 390557
Number of successful extensions: 1057
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)