Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120127.Seq
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   3.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 134 WNVHGPLVLCLSCPQFFPYWLH 69
           W+V+  + + LSC  FF  + H
Sbjct: 407 WSVNAGMWMWLSCSSFFQQFFH 428


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 574 SGLLEYL*FPKFLELLVFGLPH 509
           +GLL+   FPK+L++L   L H
Sbjct: 643 AGLLDKFFFPKWLQVLALWLNH 664


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 565 VDLKDVSGIVFETKEDREQRS 627
           V++ D  G +FE  +DREQ S
Sbjct: 48  VEIFDGRGTIFEGHDDREQPS 68


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 205 SYLVKYGNWAIKKPSSTISYILRYW 279
           SYLV YG W    P   I Y   YW
Sbjct: 215 SYLVCYGIWVYFVPLFLIIY--SYW 237


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 257 IVEDGFLMAQLPYFTR*LQI*TDLPTCINTPI--CFFWL 147
           I+  GF++  LP+FT  L +      CI+  +    FWL
Sbjct: 13  IIVGGFILCWLPFFTMYL-VRAFCRNCIHPTVFSVLFWL 50


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 257 IVEDGFLMAQLPYFTR*LQI*TDLPTCINTPI--CFFWL 147
           I+  GF++  LP+FT  L +      CI+  +    FWL
Sbjct: 461 IIVGGFILCWLPFFTMYL-VRAFCRNCIHPTVFSVLFWL 498


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 205 SYLVKYGNWAIKKPSSTISYILRYW 279
           SYLV YG W    P   I Y   YW
Sbjct: 91  SYLVCYGIWVYFVPLFLIIY--SYW 113


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 102 ETEYQGTMDIPGRSLKPEKT 161
           ETE   +MD+P   ++P+ +
Sbjct: 346 ETEQSTSMDLPSDQVEPDNS 365


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 102 ETEYQGTMDIPGRSLKPEKT 161
           ETE   +MD+P   ++P+ +
Sbjct: 346 ETEQSTSMDLPSDQVEPDNS 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,618
Number of Sequences: 438
Number of extensions: 4588
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)