Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120127.Seq
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 31 0.54
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR... 30 1.3
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR... 30 1.3
At5g11510.1 68418.m01343 myb family transcription factor (MYB3R4... 28 6.7
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 28 6.7
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi... 28 6.7
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 28 6.7
At1g23340.2 68414.m02919 expressed protein similar to At1g70550... 28 6.7
At1g23340.1 68414.m02918 expressed protein similar to At1g70550... 28 6.7
At4g33480.1 68417.m04755 expressed protein 27 8.9
At1g35860.1 68414.m04455 chloroplast outer membrane protein-rela... 27 8.9
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +2
Query: 389 QASPSEECGFSVVGETPLVIGQH-PDDDDYTLREDEESAAMMR--KTKYKQL*KLWELKI 559
++S S++ + E+P+ G+ P +DDY EDEE A + + K + K++ KL + KI
Sbjct: 36 RSSGSDDDEVAAADESPVSDGEAAPVEDDYEDEEDEEKAEISKREKARLKEMQKLKKQKI 95
>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1556
Score = 30.3 bits (65), Expect = 1.3
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Frame = +2
Query: 233 PSRNHLQRFLTFYATGYVPNTHTAADIVLSMASLIFKDKAKAPIDLIWD------DSFQA 394
P HL Y TG N A LS ASL P + + D +F A
Sbjct: 1344 PGLEHLTALKRLYMTGCNSNYSLAVKKRLSKASLKMMRNLSLPGNRVPDWFSQGPVTFSA 1403
Query: 395 SPSEECGFSVVGETPLVIGQHPDDDDYTLREDEESAAMMRK 517
P+ E V+ + + +DDDY L + E A + K
Sbjct: 1404 QPNRELR-GVIIAVVVALNDETEDDDYQLPDVMEVQAQIHK 1443
>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1544
Score = 30.3 bits (65), Expect = 1.3
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Frame = +2
Query: 233 PSRNHLQRFLTFYATGYVPNTHTAADIVLSMASLIFKDKAKAPIDLIWD------DSFQA 394
P HL Y TG N A LS ASL P + + D +F A
Sbjct: 1330 PGLEHLTALKRLYMTGCNSNYSLAVKKRLSKASLKMMRNLSLPGNRVPDWFSQGPVTFSA 1389
Query: 395 SPSEECGFSVVGETPLVIGQHPDDDDYTLREDEESAAMMRK 517
P+ E V+ + + +DDDY L + E A + K
Sbjct: 1390 QPNRELR-GVIIAVVVALNDETEDDDYQLPDVMEVQAQIHK 1429
>At5g11510.1 68418.m01343 myb family transcription factor (MYB3R4)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 961
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 61 RAP*SQYGKNWGQERQSTKGPWTFQGD 141
R P ++G+ G R+ST+G WT + D
Sbjct: 11 RIPKLRHGRTSGPARRSTRGQWTAEED 37
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/41 (26%), Positives = 27/41 (65%)
Frame = +1
Query: 508 DEEDQIQAALKTLGIKDTPVDLKDVSGIVFETKEDREQRSR 630
DE++++Q++ + +K++ + KD S E+KE++ +R +
Sbjct: 298 DEKEKVQSSEEESKVKESGKNEKDASSSQDESKEEKPERKK 338
>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
enzyme, putative similar to isoamylase from [Solanum
tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
[Hordeum vulgare] GI:21314275, [Oryza sativa]
GI:3252794; contains Pfam profiles PF00128: Alpha
amylase catalytic domain, PF02922: Isoamylase N-terminal
domain
Length = 783
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 151 GLRDLPGMSMVPWYSVSP-VPNSSHTGFMVPCVMIRS-KKPISV 26
GL D P + W+ ++P +PN S T V ++ S KK I V
Sbjct: 663 GLNDFPTAKRLQWHGLAPEIPNWSETSRFVAFSLVDSVKKEIYV 706
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 314 VLSMASLIFKDKAKAPIDLIWDDSFQASPSEEC 412
++S +F + + +WD SF + PSEEC
Sbjct: 129 MVSETDAMFASASSDGVVNVWDVSFPSQPSEEC 161
>At1g23340.2 68414.m02919 expressed protein similar to At1g70550,
At1g10750 contains Pfam profile PF03080: Arabidopsis
proteins of unknown function
Length = 409
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 217 KYGNWAIKKPSSTISYILRYWVCSKYTHSRRH 312
K+G+W ++ S T+ + YW S +TH R H
Sbjct: 287 KHGHWWLQFGSGTL---VGYWPVSLFTHLREH 315
>At1g23340.1 68414.m02918 expressed protein similar to At1g70550,
At1g10750 contains Pfam profile PF03080: Arabidopsis
proteins of unknown function
Length = 409
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 217 KYGNWAIKKPSSTISYILRYWVCSKYTHSRRH 312
K+G+W ++ S T+ + YW S +TH R H
Sbjct: 287 KHGHWWLQFGSGTL---VGYWPVSLFTHLREH 315
>At4g33480.1 68417.m04755 expressed protein
Length = 336
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 356 APIDLIWDDSFQASPSEECGFSVVGETPLVIGQHPDDDDYTLREDEESAAMMRKTKY 526
+P+D + F +S E+C +TP+ I + + D ++ DEE +++ Y
Sbjct: 157 SPLDCVIRRVFTSSKGEDCMLLCPVDTPVQILKSTNIDGWSAVSDEEVESLLPAAAY 213
>At1g35860.1 68414.m04455 chloroplast outer membrane protein-related
similar to chloroplastic outer envelope membrane protein
(OEP75) [Pisum sativum] GI:633607
Length = 399
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = -1
Query: 181 HVLTLQSVFSGLRDLPGMSMVPWYSVSPVPNSSHTGFMVPCVMIRSKKPISVK 23
HVL ++ V +R++ + + + P+PN G ++ V ++ SV+
Sbjct: 98 HVLNIKVVHEAVRNIHSLGLFSNIEIMPIPNEKREGGVIVEVKLQETDQKSVE 150
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,601
Number of Sequences: 28952
Number of extensions: 371731
Number of successful extensions: 1033
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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