Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120126.Seq
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    26   5.2  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    26   6.9  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   9.1  
SPAC167.04 |pam17||presequence translocase-associated motor subu...    25   9.1  
SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11...    25   9.1  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.1  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 175 NKLRYIDLTEIYVKLGKSF 231
           NKL Y  LT++YV+L K +
Sbjct: 271 NKLTYQQLTDLYVELSKKY 289


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = -1

Query: 302 LSFSKKCRIIIITCDRWNP--GKLLQKDFPNFT*ISVRSMYLNLFPVPISIQISES 141
           LS  + C + +I    ++P  G + QKD+ N    ++R     +FP+PI++ ++ES
Sbjct: 32  LSERQFCDVELILNGGFSPLDGFMNQKDYLNVV-ENLRLSTGEVFPIPITLDLNES 86


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 189 HRPHRDLRKVRKIFLQELTRIPAITGYDYNPAFF 290
           H    D +   +   QEL  IP  +G DY  AF+
Sbjct: 129 HLSAPDCKSYIQFMTQELFEIPGTSGIDYFMAFY 162


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 207 LRKVRKIFLQELTRIP-AITGYDYNPAFF 290
           LRK R+IF + LT IP A+TG     A+F
Sbjct: 54  LRKSRRIF-ETLTSIPTALTGLGLGSAYF 81


>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 324 KNKQLSLNSVNTNYSKIIMNNKALLIL-FNGLYVRYTMSVR 443
           KN QL  + +++NY ++I  +   LIL  N L  R   S+R
Sbjct: 15  KNPQLRKSFLHSNYVQLIQESPNFLILQHNNLLPREAKSLR 55


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 746 FSDEIWQLITFEPFK---NGTDYLREPQPLFSVDKIVRIG*FVLF 621
           F++  W+ +T EPF+   + TD   E  P F +DKI     +++F
Sbjct: 417 FAENGWKFLTCEPFEKPFDETDRFYENMPTF-LDKIKEWPDYLIF 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,674
Number of Sequences: 5004
Number of extensions: 65142
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)